View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8524_low_7 (Length: 499)

Name: NF8524_low_7
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8524_low_7
NF8524_low_7
[»] chr5 (26 HSPs)
chr5 (27-272)||(41342514-41342762)
chr5 (373-485)||(41342312-41342426)
chr5 (340-400)||(8457036-8457096)
chr5 (294-400)||(10081093-10081200)
chr5 (339-393)||(36769153-36769207)
chr5 (343-400)||(614465-614522)
chr5 (348-400)||(9738056-9738108)
chr5 (340-400)||(11856290-11856350)
chr5 (340-400)||(25560400-25560460)
chr5 (340-400)||(42119617-42119677)
chr5 (340-400)||(29491485-29491545)
chr5 (339-399)||(27916133-27916194)
chr5 (340-383)||(22903252-22903295)
chr5 (276-317)||(41342447-41342488)
chr5 (340-375)||(2676533-2676568)
chr5 (340-387)||(10052618-10052665)
chr5 (343-393)||(6174743-6174793)
chr5 (339-393)||(23218481-23218534)
chr5 (340-393)||(16618649-16618701)
chr5 (339-393)||(6257489-6257542)
chr5 (343-393)||(29790297-29790347)
chr5 (339-393)||(33271349-33271403)
chr5 (339-393)||(37169112-37169165)
chr5 (340-393)||(3341199-3341252)
chr5 (340-393)||(38397595-38397647)
chr5 (339-400)||(39862560-39862619)
[»] chr4 (25 HSPs)
chr4 (297-400)||(17888623-17888727)
chr4 (340-400)||(35322777-35322837)
chr4 (299-400)||(46473948-46474049)
chr4 (293-400)||(31377337-31377445)
chr4 (340-400)||(322622-322682)
chr4 (348-401)||(20818570-20818623)
chr4 (345-400)||(9742606-9742661)
chr4 (339-400)||(12792304-12792365)
chr4 (340-386)||(11054448-11054494)
chr4 (340-400)||(10094466-10094531)
chr4 (339-400)||(50328790-50328851)
chr4 (357-400)||(24991965-24992008)
chr4 (339-393)||(1535767-1535820)
chr4 (339-393)||(25954746-25954799)
chr4 (339-393)||(35018932-35018985)
chr4 (339-393)||(37801343-37801396)
chr4 (340-393)||(16338323-16338375)
chr4 (340-383)||(33981997-33982040)
chr4 (339-378)||(47084014-47084053)
chr4 (343-393)||(34240993-34241042)
chr4 (339-393)||(49284353-49284406)
chr4 (339-385)||(52632514-52632559)
chr4 (340-401)||(54090176-54090236)
chr4 (340-400)||(19124811-19124871)
chr4 (404-460)||(44362906-44362962)
[»] chr3 (26 HSPs)
chr3 (340-400)||(1781757-1781817)
chr3 (339-400)||(10839453-10839514)
chr3 (339-401)||(48206848-48206910)
chr3 (341-398)||(8926762-8926819)
chr3 (340-400)||(20382514-20382574)
chr3 (340-400)||(36539627-36539687)
chr3 (340-400)||(19649445-19649506)
chr3 (340-400)||(36826027-36826087)
chr3 (340-400)||(43347409-43347468)
chr3 (344-393)||(54546904-54546953)
chr3 (344-401)||(19644400-19644458)
chr3 (339-393)||(33103738-33103792)
chr3 (340-394)||(47315183-47315237)
chr3 (340-386)||(3178699-3178745)
chr3 (339-393)||(5391453-5391506)
chr3 (339-393)||(6280438-6280492)
chr3 (339-393)||(23467573-23467626)
chr3 (339-393)||(40845996-40846049)
chr3 (339-393)||(44995048-44995101)
chr3 (340-393)||(13856096-13856148)
chr3 (340-393)||(21853194-21853246)
chr3 (339-383)||(50663136-50663180)
chr3 (340-400)||(791812-791869)
chr3 (339-393)||(32352843-32352896)
chr3 (343-393)||(51336208-51336258)
chr3 (352-393)||(46685862-46685903)
[»] chr1 (27 HSPs)
chr1 (339-401)||(26835332-26835394)
chr1 (343-401)||(38859849-38859907)
chr1 (343-400)||(30252818-30252875)
chr1 (340-400)||(10907721-10907781)
chr1 (339-397)||(44107464-44107522)
chr1 (340-400)||(14796871-14796931)
chr1 (340-400)||(14805745-14805805)
chr1 (346-400)||(37189304-37189358)
chr1 (342-391)||(1106773-1106822)
chr1 (296-393)||(48392485-48392581)
chr1 (339-393)||(3346782-3346835)
chr1 (343-393)||(5558308-5558358)
chr1 (339-393)||(7742858-7742911)
chr1 (339-393)||(10156095-10156148)
chr1 (358-400)||(30745357-30745399)
chr1 (358-400)||(30766808-30766850)
chr1 (339-393)||(42517377-42517430)
chr1 (340-394)||(44462560-44462614)
chr1 (339-393)||(49902464-49902517)
chr1 (340-393)||(23908282-23908334)
chr1 (340-379)||(42456566-42456606)
chr1 (340-378)||(2756256-2756294)
chr1 (343-393)||(5974988-5975037)
chr1 (358-400)||(8430514-8430556)
chr1 (339-393)||(26511712-26511766)
chr1 (339-393)||(29149627-29149680)
chr1 (360-393)||(45968683-45968716)
[»] chr7 (17 HSPs)
chr7 (340-400)||(10334173-10334233)
chr7 (340-394)||(17303194-17303248)
chr7 (340-400)||(26284451-26284510)
chr7 (340-400)||(33057730-33057789)
chr7 (339-401)||(2702292-2702354)
chr7 (340-394)||(41853128-41853182)
chr7 (340-394)||(19334640-19334693)
chr7 (339-393)||(24320518-24320571)
chr7 (339-385)||(25128163-25128209)
chr7 (339-393)||(29556018-29556071)
chr7 (339-393)||(44164822-44164875)
chr7 (340-393)||(34707113-34707165)
chr7 (339-378)||(43342415-43342454)
chr7 (339-393)||(10576669-10576722)
chr7 (339-393)||(29238222-29238275)
chr7 (339-393)||(32876609-32876662)
chr7 (355-400)||(23032198-23032243)
[»] chr6 (14 HSPs)
chr6 (345-400)||(13103191-13103246)
chr6 (343-400)||(24500773-24500830)
chr6 (340-400)||(11279536-11279595)
chr6 (340-394)||(28750729-28750783)
chr6 (339-400)||(27863694-27863754)
chr6 (297-400)||(34103638-34103740)
chr6 (339-395)||(11084606-11084661)
chr6 (342-393)||(11212669-11212720)
chr6 (339-393)||(14309877-14309930)
chr6 (339-393)||(24694730-24694783)
chr6 (340-393)||(9231933-9231985)
chr6 (340-395)||(8415353-8415407)
chr6 (355-401)||(7517026-7517072)
chr6 (296-324)||(34383475-34383503)
[»] chr2 (20 HSPs)
chr2 (340-395)||(28321781-28321836)
chr2 (339-400)||(1387361-1387421)
chr2 (339-400)||(14539777-14539838)
chr2 (340-401)||(40780050-40780111)
chr2 (340-392)||(23685451-23685503)
chr2 (340-397)||(32486239-32486296)
chr2 (339-394)||(41674786-41674841)
chr2 (340-394)||(6318538-6318592)
chr2 (339-400)||(33009666-33009728)
chr2 (340-393)||(3956567-3956620)
chr2 (339-394)||(2250473-2250528)
chr2 (343-401)||(2888039-2888097)
chr2 (339-393)||(19181544-19181597)
chr2 (339-393)||(40277367-40277420)
chr2 (339-393)||(42769837-42769890)
chr2 (340-394)||(43139741-43139795)
chr2 (339-392)||(14186518-14186570)
chr2 (340-393)||(29846439-29846491)
chr2 (343-394)||(25665222-25665273)
chr2 (339-393)||(14942123-14942176)
[»] scaffold0045 (1 HSPs)
scaffold0045 (343-400)||(34525-34582)
[»] chr8 (18 HSPs)
chr8 (340-395)||(10112042-10112097)
chr8 (339-393)||(35806790-35806843)
chr8 (339-400)||(26021391-26021451)
chr8 (340-384)||(2824270-2824314)
chr8 (343-387)||(16819061-16819105)
chr8 (339-393)||(21525354-21525407)
chr8 (339-393)||(33934448-33934501)
chr8 (340-394)||(34697468-34697522)
chr8 (339-393)||(42072424-42072477)
chr8 (339-400)||(16523064-16523125)
chr8 (339-400)||(19334778-19334838)
chr8 (340-393)||(22324593-22324645)
chr8 (340-376)||(16591440-16591476)
chr8 (339-388)||(2271196-2271246)
chr8 (359-393)||(24065288-24065322)
chr8 (343-393)||(42013872-42013921)
chr8 (360-400)||(21488082-21488121)
chr8 (340-392)||(43282932-43282984)
[»] scaffold0016 (1 HSPs)
scaffold0016 (339-384)||(85505-85550)
[»] scaffold0086 (1 HSPs)
scaffold0086 (339-394)||(20902-20957)
[»] scaffold0079 (1 HSPs)
scaffold0079 (340-393)||(54485-54537)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 41342762 - 41342514
Alignment:
Q  27 taagattactaaaactctaacttgaaagcccaccaacnnnnnnntctaatgttttaaaatttgttttaggcttcaccgactaatgaaaattctttgaccg 126  Q
    ||||| |||||||||||||||||||| ||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41342762 taagactactaaaactctaacttgaa-gcccaccaacaaaaaaatctcatgttttaaaatttgttttaggcttcaccgactaatgaaaattctttgaccg 41342664  T
Q  127 gctagagtcaacattatatatttaagattgaatctgtaaaaacttaagagccaacttattgtttctc----ttaccttcattggcttccaatcgaagtgg 222  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  41342663 gctagagtcaacattatatatttaagatagaatatttaaaaacttaagagccaacttattgtttctcttacttaccttcattggcttccaatcgaagtgg 41342564  T
Q  223 aagtgagagttcaagtggcaactcaacgttgagtgagccaaatgcaatgc 272  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  41342563 aagtgagagttcaagtggcaactcaacgttgagtaagccaaatacaatgc 41342514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 373 - 485
Target Start/End: Complemental strand, 41342426 - 41342312
Alignment:
Q  373 ttgcaagcaaataatcaaaaaa-tctaaaataggg-gaccaattctacataaaattgaaaattaggggaccaaaactgtaattaagcctaaatattacat 470  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||    
T  41342426 ttgcaagcaaataatcaaaaaaatctaaaatagggagaccaattctacataaaagtgaaaattacgggaccaaaactgcaattaagcctagatattacat 41342327  T
Q  471 gtatatgacaaaatt 485  Q
    |||||||||||||||    
T  41342326 gtatatgacaaaatt 41342312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 8457096 - 8457036
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaa 8457036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 294 - 400
Target Start/End: Original strand, 10081093 - 10081200
Alignment:
Q  294 aagcagtggcggagctaggattattgtaaagcctgggtnnnnnnnt-ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaa 392  Q
    ||||||||||||||| ||||||||||||||||| |||          |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  10081093 aagcagtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaa 10081192  T
Q  393 aatctaaa 400  Q
    ||||||||    
T  10081193 aatctaaa 10081200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 36769207 - 36769153
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36769207 tttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaa 36769153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 614522 - 614465
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaa 614465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 9738108 - 9738056
Alignment:
Q  348 catttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9738108 catttataggggtttacataagaaattgcaagcaaataaacaaaaaatctaaa 9738056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 11856290 - 11856350
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaa 11856350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 25560460 - 25560400
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaa 25560400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 42119617 - 42119677
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaa 42119677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 29491545 - 29491485
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||    
T  29491545 ttgcaacacatttatatgtgtttgcataagaaattgcaagcaaataatcaaaaaatttaaa 29491485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 27916133 - 27916194
Alignment:
Q  339 tttgcaacacatttatagg-ggtttacataagaaattgcaagcaaataatcaaaaaatctaa 399  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||    
T  27916133 tttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaa 27916194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 22903252 - 22903295
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaa 383  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  22903252 ttgcaacacatttatagaggtttacataagaaattgcaagcaaa 22903295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 41342488 - 41342447
Alignment:
Q  276 aaatgacatttatattcaaagcagtggcggagctaggattat 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  41342488 aaatgacatttatattcaaagcagtggcggagccaggattat 41342447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 375
Target Start/End: Complemental strand, 2676568 - 2676533
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattg 375  Q
    ||||||||||||||||||||||||||||||||||||    
T  2676568 ttgcaacacatttataggggtttacataagaaattg 2676533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 10052665 - 10052618
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataat 387  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||||    
T  10052665 ttgcaacatatttataggcttttacataagaaattgcaagcaaataat 10052618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 6174743 - 6174793
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||| |||||    
T  6174743 caacatatttatgggggtttacataggaaattgcaagcaaataataaaaaa 6174793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 23218481 - 23218534
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  23218481 tttgcaacacatttatagggagt-acataagaaattgcaagcaaataataaaaaa 23218534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 16618701 - 16618649
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  16618701 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 16618649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 6257542 - 6257489
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | | ||||||||||||||||||||||| |||||    
T  6257542 tttgcaacacatttatagggcgt-atataagaaattgcaagcaaataataaaaaa 6257489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 29790347 - 29790297
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||| |||||||||  ||||||||||||||  |||||||||||||||||    
T  29790347 caacacgtttatagggaattacataagaaattaaaagcaaataatcaaaaa 29790297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 33271403 - 33271349
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||| | ||||||||||||||| |||||||||| ||| |||||||| |||||    
T  33271403 tttgcaatatatttataggggtttatataagaaattacaaacaaataataaaaaa 33271349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 37169165 - 37169112
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||| ||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  37169165 tttgccacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 37169112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 3341252 - 3341199
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||| |  | ||||||||||| |||||| |||||||||||||||||    
T  3341252 ttgcaacacattcaaggaggtttacataaaaaattgaaagcaaataatcaaaaa 3341199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 38397595 - 38397647
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||   | ||||||||||||||||||||||||| |||||    
T  38397595 ttgcaacacatttataggacgt-acataagaaattgcaagcaaataataaaaaa 38397647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 39862619 - 39862560
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||| |||||  | | ||||||||||||||||||||||| ||||||||||||    
T  39862619 tttgcaacacatttttagggcgt-atataagaaattgcaagcaaataat-aaaaaatctaaa 39862560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 400
Target Start/End: Complemental strand, 17888727 - 17888623
Alignment:
Q  297 cagtggcggagctaggattattgtaaagcctgggtnnnnnnnt-ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaat 395  Q
    |||||||||||| ||||||||||||||||| |||        | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17888727 cagtggcggagccaggattattgtaaagccggggcaaaaatatattgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaat 17888628  T
Q  396 ctaaa 400  Q
    |||||    
T  17888627 ctaaa 17888623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 35322837 - 35322777
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaa 35322777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 400
Target Start/End: Original strand, 46473948 - 46474049
Alignment:
Q  299 gtggcggagctaggattattgtaaagcctgggtnnnnnnntttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatcta 398  Q
    |||||||||| ||||||||||||||| ||||||       ||||||||||||||||| || ||||||||||||||| ||||||||||||  |||||||||    
T  46473948 gtggcggagccaggattattgtaaagtctgggtaaaaaattttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatcta 46474047  T
Q  399 aa 400  Q
    ||    
T  46474048 aa 46474049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 31377337 - 31377445
Alignment:
Q  293 aaagcagtggcggagctaggattattgtaaagcctgggtnnnnnnnt-ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaa 391  Q
    |||||||||||||||| ||||||||||||||||| |||          ||||||||||||||||| |||||||||||||||||||||||||||| | |||    
T  31377337 aaagcagtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaa 31377436  T
Q  392 aaatctaaa 400  Q
    |||||||||    
T  31377437 aaatctaaa 31377445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 322682 - 322622
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaa 322622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 20818570 - 20818623
Alignment:
Q  348 catttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaaa 401  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  20818570 catttatagaggtttacataagaaattgcaaacaaataatcaaaaaatctaaaa 20818623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 9742661 - 9742606
Alignment:
Q  345 acacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaa 9742606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 12792365 - 12792304
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||||  ||||| |||||||||| ||||||||||||| |||||||||||    
T  12792365 tttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaa 12792304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 11054448 - 11054494
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataa 386  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataa 11054494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 10094531 - 10094466
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaat-----tgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||| ||||||||||| |||||||||||||||     |||||||||||||||||||||||||||    
T  10094531 ttgcaatacatttataggtgtttacataagaaatataattgcaagcaaataatcaaaaaatctaaa 10094466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 50328790 - 50328851
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||| |||||||||||| ||||||||||  |||||| ||||||| ||||    
T  50328790 tttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaa 50328851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 400
Target Start/End: Original strand, 24991965 - 24992008
Alignment:
Q  357 gggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  24991965 gggtttacataagaaattgccagcaaataatcataaaatctaaa 24992008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 1535767 - 1535820
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  1535767 tttgcaacacatttatagggcat-acataagaaattgcaagcaaataataaaaaa 1535820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 25954746 - 25954799
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  25954746 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 25954799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 35018932 - 35018985
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||| || | |||||||||||||||||||||||||| |||||    
T  35018932 tttgcaacacatttataagg-tgtacataagaaattgcaagcaaataataaaaaa 35018985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 37801396 - 37801343
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  37801396 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 37801343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 16338375 - 16338323
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  16338375 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 16338323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 33981997 - 33982040
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaa 383  Q
    |||||||||||||| | |||||||||||| ||||||||||||||    
T  33981997 ttgcaacacatttacatgggtttacataaaaaattgcaagcaaa 33982040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 47084014 - 47084053
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaa 378  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  47084014 tttgcaacacctttataggtgtttacataagaaattgcaa 47084053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 34240993 - 34241042
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  34240993 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 34241042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 49284353 - 49284406
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | |||||||||||||||| |||||||| |||||    
T  49284353 tttgcaacacatttatagggcgt-acataagaaattgcaaacaaataataaaaaa 49284406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Original strand, 52632514 - 52632559
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaata 385  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||    
T  52632514 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaata 52632559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 54090176 - 54090236
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaa-ttgcaagcaaataatcaaaaaatctaaaa 401  Q
    ||||||||||| ||||||| ||||||||| ||| ||||||||||||||| |||||||||||||    
T  54090176 ttgcaacacatctataggg-tttacataaaaaaattgcaagcaaataat-aaaaaatctaaaa 54090236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 19124871 - 19124811
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||| || ||||||  |||||||||||||||| ||| ||||||| ||||||| ||||    
T  19124871 ttgcaacaaatgtataggaatttacataagaaattgtaagtaaataataaaaaaatttaaa 19124811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 460
Target Start/End: Complemental strand, 44362962 - 44362906
Alignment:
Q  404 ggggaccaattctacataaaattgaaaattaggggaccaaaactgtaattaagccta 460  Q
    |||||||||||||||| ||   |||||||  |||||||||||||| |||||||||||    
T  44362962 ggggaccaattctacaaaatggtgaaaatagggggaccaaaactgcaattaagccta 44362906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 1781757 - 1781817
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaa 1781817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 10839514 - 10839453
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10839514 tttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaa 10839453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 48206848 - 48206910
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaaa 401  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||    
T  48206848 tttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaa 48206910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 8926762 - 8926819
Alignment:
Q  341 tgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatcta 398  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatcta 8926819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 20382514 - 20382574
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaa 20382574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 36539627 - 36539687
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaa 36539687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 19649506 - 19649445
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataat-caaaaaatctaaa 400  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaa 19649445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 36826087 - 36826027
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||    
T  36826087 ttgcaacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaa 36826027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 43347468 - 43347409
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43347468 ttgcaacataattataggg-tttacataagaaattgcaagcaaataatcaaaaaatctaaa 43347409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 54546904 - 54546953
Alignment:
Q  344 aacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaa 54546953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 19644458 - 19644400
Alignment:
Q  344 aacacatttataggggtttacataagaaattgcaagcaaataat-caaaaaatctaaaa 401  Q
    |||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||    
T  19644458 aacacatttatagggaattacataagaaattgcaatcaaataatccaaaaaatctaaaa 19644400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 33103738 - 33103792
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||| || ||||||||||||||| |||||||||||| |||||    
T  33103738 tttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaa 33103792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 47315237 - 47315183
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    |||||||| ||||||||| ||||||||||||||||||||  ||||||||||||||    
T  47315237 ttgcaacatatttataggagtttacataagaaattgcaaataaataatcaaaaaa 47315183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 3178699 - 3178745
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataa 386  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataa 3178745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 5391453 - 5391506
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  5391453 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 5391506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 6280492 - 6280438
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||  ||||||||||| |||| |||||||||| ||||||||    
T  6280492 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa 6280438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 23467626 - 23467573
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  23467626 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 23467573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 40846049 - 40845996
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  40846049 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 40845996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 44995101 - 44995048
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  44995101 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 44995048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 13856096 - 13856148
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  13856096 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 13856148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 21853194 - 21853246
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  21853194 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 21853246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 50663136 - 50663180
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaa 383  Q
    |||||| |||||||||||| ||||||||||||||||| |||||||    
T  50663136 tttgcatcacatttataggagtttacataagaaattggaagcaaa 50663180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 791812 - 791869
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||| ||||| |||||||||||||||| ||   ||||||||||||||| ||||    
T  791812 ttgcaacacattaataggtgtttacataagaaattaca---aaataatcaaaaaatataaa 791869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 32352843 - 32352896
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||| ||||||||||| |||||    
T  32352843 tttgcaacacatttatagggcgt-acataagaaattgtaagcaaataataaaaaa 32352896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 51336208 - 51336258
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||  |||||| |||||||||||||| ||||||| |||||    
T  51336208 caacacatttatagaagtttacgtaagaaattgcaagtaaataataaaaaa 51336258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 46685903 - 46685862
Alignment:
Q  352 tataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||| ||||||||||||||| |||||||| |||||    
T  46685903 tataggggtttgcataagaaattgcaaacaaataataaaaaa 46685862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 26835332 - 26835394
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaaa 401  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  26835332 tttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaa 26835394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 38859849 - 38859907
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaa 38859907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 30252875 - 30252818
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30252875 caacatatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 30252818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 10907781 - 10907721
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaa 10907721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 44107522 - 44107464
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatct 397  Q
    ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||    
T  44107522 tttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatct 44107464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 14796871 - 14796931
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaa 14796931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 14805745 - 14805805
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaa 14805805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 37189304 - 37189358
Alignment:
Q  346 cacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  37189304 cacatttatagaggtttacataagaaattgcaaacaaataatcaaaaaatttaaa 37189358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 1106773 - 1106822
Alignment:
Q  342 gcaacacatttataggggtttacataagaaattgcaagcaaataatcaaa 391  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  1106773 gcaacacatttataagaatttacataagaaattgcaagcaaataatcaaa 1106822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 393
Target Start/End: Complemental strand, 48392581 - 48392485
Alignment:
Q  296 gcagtggcggagctaggattattgtaaagcctgggtnnnnnnntttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||| |||| |||||||||| | |||        ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  48392581 gcagtggcggagccaggaatattgtaaagtccgggcaaaaaaatttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 48392485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 3346782 - 3346835
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  3346782 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 3346835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 5558308 - 5558358
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||| ||||||||| ||||| ||| |||||||||||||||||||||||||    
T  5558308 caacatatttataggagtttatatatgaaattgcaagcaaataatcaaaaa 5558358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 7742911 - 7742858
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  7742911 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 7742858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 10156148 - 10156095
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  10156148 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 10156095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 30745357 - 30745399
Alignment:
Q  358 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  30745357 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaa 30745399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 30766808 - 30766850
Alignment:
Q  358 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  30766808 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaa 30766850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 42517430 - 42517377
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  42517430 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 42517377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 44462614 - 44462560
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    |||||||| |||| |||||||||| |||||||| |||||| ||||||||||||||    
T  44462614 ttgcaacatatttttaggggtttatataagaaactgcaagtaaataatcaaaaaa 44462560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 49902464 - 49902517
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  49902464 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 49902517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 23908282 - 23908334
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  23908282 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 23908334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 42456566 - 42456606
Alignment:
Q  340 ttgcaacacatttatagggg-tttacataagaaattgcaag 379  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  42456566 ttgcaacacatttataggggatttacataagaaattgcaag 42456606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 2756294 - 2756256
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaa 378  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  2756294 ttgcaacatatttataggagtttacataagaaattgcaa 2756256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 5974988 - 5975037
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  5974988 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 5975037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 8430556 - 8430514
Alignment:
Q  358 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||    
T  8430556 ggttaacataagaaattgcaagcaaataataaaaaaatttaaa 8430514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 26511766 - 26511712
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||| || |||||||||| ||||| |||||||||| ||| |||||||||||||    
T  26511766 tttgcaccaaatttatagggatttacgtaagaaattgtaagtaaataatcaaaaa 26511712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 29149680 - 29149627
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||| |||||||  | ||||||||||||||||||||||||| |||||    
T  29149680 tttgcaacacatgtatagggcgt-acataagaaattgcaagcaaataataaaaaa 29149627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 45968683 - 45968716
Alignment:
Q  360 tttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||| |||||||||||||    
T  45968683 tttacataagaaattgcaagtaaataatcaaaaa 45968716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 10334173 - 10334233
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaa 10334233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 17303248 - 17303194
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaa 17303194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 26284510 - 26284451
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataat-aaaaaatctaaa 26284451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 33057789 - 33057730
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  33057789 ttgcaacacatttatagga-tttacataagaaattgcaagcaaataataaaaaaatctaaa 33057730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 2702354 - 2702292
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaaa 401  Q
    ||||||||| |||| || ||||||||||||||||||||| | ||||||| |||||||||||||    
T  2702354 tttgcaacatatttttatgggtttacataagaaattgcatgaaaataataaaaaaatctaaaa 2702292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 41853128 - 41853182
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    ||||||||||||||||| |||||| |||  |||||||||||||||||||||||||    
T  41853128 ttgcaacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaa 41853182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 19334693 - 19334640
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    |||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||    
T  19334693 ttgcaacaaatttataggg-tttatataagaaattgcaagcaaataataaaaaaa 19334640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 24320571 - 24320518
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  24320571 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 24320518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 25128209 - 25128163
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaata 385  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  25128209 tttgcaacatatttatatgggtttacataagaaattgcatgcaaata 25128163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 29556071 - 29556018
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  29556071 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 29556018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 44164875 - 44164822
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  44164875 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 44164822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 34707113 - 34707165
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  34707113 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 34707165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 43342415 - 43342454
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaa 378  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  43342415 tttgaaacacatttataggtgtttacataagaaattgcaa 43342454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 10576669 - 10576722
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||| ||||||||||||  | ||||||||||||||||||||||||| |||||    
T  10576669 tttgcaatacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 10576722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 29238275 - 29238222
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||| ||||||||||| |||||    
T  29238275 tttgcaacacatttatagggcct-acataagaaattgtaagcaaataataaaaaa 29238222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 32876662 - 32876609
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||| |  | ||||||||||||||||||||||||| |||||    
T  32876662 tttgcaacacatttatagagcgt-acataagaaattgcaagcaaataataaaaaa 32876609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 23032243 - 23032198
Alignment:
Q  355 aggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||| |||| |||| ||||| |||||||||||||||||||||||||    
T  23032243 agggatttagataaaaaattacaagcaaataatcaaaaaatctaaa 23032198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 13103246 - 13103191
Alignment:
Q  345 acacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaa 13103191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 24500830 - 24500773
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  24500830 caacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaa 24500773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 11279536 - 11279595
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataat-aaaaaatctaaa 11279595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 28750783 - 28750729
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaa 28750729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 27863694 - 27863754
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||||  |||||||||||||||||||| |||||||| ||||||||||||    
T  27863694 tttgcaacacatttatagatgtttacataagaaattgcaaacaaataat-aaaaaatctaaa 27863754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 400
Target Start/End: Original strand, 34103638 - 34103740
Alignment:
Q  297 cagtggcggagctaggattattgtaaagcctgggtnnnnnnntttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatc 396  Q
    |||||||||||| ||||||||| |||||||| ||         |||||||||||||| |  ||||||||||||||||||||| |||||||| ||||||||    
T  34103638 cagtggcggagccaggattattataaagcctaggcaaaataaattgcaacacatttacaaaggtttacataagaaattgcaaacaaataat-aaaaaatc 34103736  T
Q  397 taaa 400  Q
    ||||    
T  34103737 taaa 34103740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 11084606 - 11084661
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaat 395  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||||    
T  11084606 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaaat 11084661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 11212669 - 11212720
Alignment:
Q  342 gcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||| |||||    
T  11212669 gcaacacatttataggaatttacataagaaattacaagcaaataattaaaaa 11212720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 14309930 - 14309877
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  14309930 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 14309877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 24694783 - 24694730
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  24694783 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 24694730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 9231985 - 9231933
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  9231985 ttgcaacacatttatagggcat-acataagaaattgcaagcaaataataaaaaa 9231933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 8415407 - 8415353
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaat 395  Q
    |||||| ||||||| ||||||| |||||||||||||||||| |||||| |||||||    
T  8415407 ttgcaatacatttaaaggggttaacataagaaattgcaagc-aataataaaaaaat 8415353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 7517026 - 7517072
Alignment:
Q  355 aggggtttacataagaaattgcaagcaaataatcaaaaaatctaaaa 401  Q
    |||| ||||| ||||||||||||||||||| || |||||||||||||    
T  7517026 agggttttacttaagaaattgcaagcaaatgataaaaaaatctaaaa 7517072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 324
Target Start/End: Complemental strand, 34383503 - 34383475
Alignment:
Q  296 gcagtggcggagctaggattattgtaaag 324  Q
    |||||||||||||||||||||||||||||    
T  34383503 gcagtggcggagctaggattattgtaaag 34383475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 28321836 - 28321781
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaat 395  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaat 28321781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 1387421 - 1387361
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  1387421 tttgcaacacatttgtaagggtttacataagaaattgcaagcaaataat-aaaaaatctaaa 1387361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 14539838 - 14539777
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||    
T  14539838 tttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaa 14539777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 40780050 - 40780111
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaaa 401  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaa 40780111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 23685503 - 23685451
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaa 392  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaa 23685451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 32486239 - 32486296
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatct 397  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatct 32486296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 41674841 - 41674786
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| | ||||||    
T  41674841 tttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaa 41674786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 6318592 - 6318538
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaa 6318538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 33009666 - 33009728
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatca-aaaaatctaaa 400  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||||| | |||||||||||    
T  33009666 tttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaa 33009728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 3956567 - 3956620
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||| |||||    
T  3956567 ttgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaa 3956620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 2250473 - 2250528
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    |||||||||||||||| |||||||| |||| |||||||||| ||||||| ||||||    
T  2250473 tttgcaacacatttattggggtttatataataaattgcaagtaaataattaaaaaa 2250528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 2888039 - 2888097
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaaa 401  Q
    ||||| ||||||||||||||||||||||  |||| ||||| |||| |||||||||||||    
T  2888039 caacatatttataggggtttacataagactttgctagcaattaataaaaaaatctaaaa 2888097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 19181544 - 19181597
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  19181544 tttgcaacacatttatagggcat-acataagaaattgcaagcaaataataaaaaa 19181597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 40277420 - 40277367
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  40277420 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 40277367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 42769890 - 42769837
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  42769890 tttgcaacacatttatagggcat-acataagaaattgcaagcaaataataaaaaa 42769837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 43139741 - 43139795
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    ||||||| ||||| |||| ||||| ||||||||||||||||||||||| ||||||    
T  43139741 ttgcaacgcatttgtaggtgtttatataagaaattgcaagcaaataataaaaaaa 43139795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 14186570 - 14186518
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaa 392  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| ||||    
T  14186570 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaa 14186518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 29846439 - 29846491
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  29846439 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 29846491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 394
Target Start/End: Original strand, 25665222 - 25665273
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    ||||| |||||||| |||||  |||| |||||||||||||||||||||||||    
T  25665222 caacatatttatagcggtttgtataaaaaattgcaagcaaataatcaaaaaa 25665273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 14942176 - 14942123
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||| ||  | ||||||||||||||||||||||||| |||||    
T  14942176 tttgcaacacatttataaggcgt-acataagaaattgcaagcaaataataaaaaa 14942123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 34582 - 34525
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  34582 caacacgtttataggagtttacataagaaattgtaagcaaataatcaaaaaatctaaa 34525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 10112042 - 10112097
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaat 395  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaat 10112097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 35806790 - 35806843
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  35806790 tttgcaacacatttataggg-tgtacataagaaattgcaagcaaataataaaaaa 35806843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 26021391 - 26021451
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||| ||||    
T  26021391 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaaatgtaaa 26021451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 2824314 - 2824270
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaat 384  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  2824314 ttgcaacacatttaaaggtgtttacataagaaattgcaagcaaat 2824270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 16819105 - 16819061
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataat 387  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataat 16819061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 21525354 - 21525407
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  21525354 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 21525407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 33934501 - 33934448
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  33934501 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 33934448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 34697522 - 34697468
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    |||||||| ||||||| |  |||||||||||||||||||||||||||| ||||||    
T  34697522 ttgcaacatatttataagaatttacataagaaattgcaagcaaataataaaaaaa 34697468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 42072424 - 42072477
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||| |||||    
T  42072424 tttgcaacacatttatattg-tttacataagaaattgcaagcaaataataaaaaa 42072477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 16523064 - 16523125
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||  |||||| ||||| |||||||||||||||||| | || |||||||    
T  16523064 tttgcaacacatttatgagggtttgcataaaaaattgcaagcaaataataagaatatctaaa 16523125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 19334778 - 19334838
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||| ||| ||| ||||    
T  19334778 tttgcaacatatttataggggtt-acataagaaattgtaagcaaataataaaacaatttaaa 19334838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 22324593 - 22324645
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  22324593 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 22324645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 16591476 - 16591440
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgc 376  Q
    |||||||||||||||| ||||||||||||||||||||    
T  16591476 ttgcaacacatttataagggtttacataagaaattgc 16591440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 2271196 - 2271246
Alignment:
Q  339 tttgcaacacatttata-ggggtttacataagaaattgcaagcaaataatc 388  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| ||||    
T  2271196 tttgcaacacatttatagggggtttacataagaaattgtaagtaaaaaatc 2271246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 393
Target Start/End: Original strand, 24065288 - 24065322
Alignment:
Q  359 gtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||||||||||||||| |||||    
T  24065288 gtttacataagaaattgcaagcaaataataaaaaa 24065322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 42013872 - 42013921
Alignment:
Q  343 caacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    ||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  42013872 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 42013921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 21488082 - 21488121
Alignment:
Q  360 tttacataagaaattgcaagcaaataatcaaaaaatctaaa 400  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  21488082 tttacataagaaattgcaagc-aataataaaaaaatctaaa 21488121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 43282984 - 43282932
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaa 392  Q
    |||||| ||||||||||   |||||||||||||| ||||||||||||| ||||    
T  43282984 ttgcaatacatttatagatatttacataagaaatagcaagcaaataataaaaa 43282932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 85505 - 85550
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaat 384  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||    
T  85505 tttgcaacatatttatagaggtttacataagaaattgcaagcaaat 85550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 20957 - 20902
Alignment:
Q  339 tttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaaa 394  Q
    ||||||||||||||||| |  |||||||||||||||||||||||| |||| |||||    
T  20957 tttgcaacacatttatacgaatttacataagaaattgcaagcaaaaaatctaaaaa 20902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 54485 - 54537
Alignment:
Q  340 ttgcaacacatttataggggtttacataagaaattgcaagcaaataatcaaaaa 393  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| |||||    
T  54485 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa 54537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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