View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8524_low_8 (Length: 483)

Name: NF8524_low_8
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8524_low_8
NF8524_low_8
[»] chr8 (16 HSPs)
chr8 (18-483)||(25494505-25494970)
chr8 (216-393)||(25678209-25678386)
chr8 (64-215)||(25677873-25678024)
chr8 (216-480)||(25617467-25617752)
chr8 (321-480)||(25391715-25391874)
chr8 (216-325)||(25391585-25391694)
chr8 (217-325)||(25358555-25358662)
chr8 (64-215)||(25617131-25617278)
chr8 (124-215)||(25391309-25391400)
chr8 (136-215)||(25358290-25358369)
chr8 (321-385)||(25358683-25358747)
chr8 (18-61)||(25650344-25650387)
chr8 (18-61)||(25358208-25358251)
chr8 (18-61)||(25677571-25677614)
chr8 (18-61)||(25391249-25391292)
chr8 (20-61)||(25616613-25616654)
[»] scaffold1041 (2 HSPs)
scaffold1041 (321-480)||(870-1029)
scaffold1041 (216-325)||(1050-1159)
[»] scaffold0466 (3 HSPs)
scaffold0466 (321-471)||(7955-8105)
scaffold0466 (221-325)||(8126-8230)
scaffold0466 (146-215)||(8427-8499)


Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 25494505 - 25494970
Alignment:
Q  18 cttatattatcaatcaactcatacacctctctttgaactacacctctcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494505 cttatattatcaatcaactcatacacctctctttgaactacacctctcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccat 25494604  T
Q  118 tatgtcgccacttgcaccatatatatagaagacgtatggaaacattcgggagcagataagttgtcaaaaatcaagttcatcattttatattctattctga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494605 tatgtcgccacttgcaccatatatatagaagacgtatggaaacattcgggagcagataagttgtcaaaaatcaagttcatcattttatattctattctga 25494704  T
Q  218 aatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctatag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494705 aatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctatag 25494804  T
Q  318 gaatccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttgatgagcgacttgcgaaaaatactaaatttcaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494805 gaatccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttgatgagcgacttgcgaaaaatactaaatttcaa 25494904  T
Q  418 tcaatcttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttcatg 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494905 tcaatcttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttcatg 25494970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 216 - 393
Target Start/End: Original strand, 25678209 - 25678386
Alignment:
Q  216 gaaatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctat 315  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678209 gaaatctatttcctattaatatttccaacagtaatatcttgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctat 25678308  T
Q  316 aggaatccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttgatgagcga 393  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||    
T  25678309 aggaatccatatgaggagctctcaactcatgtttttcaacttgtgaaagtactattcttacggtaatttgatgagcga 25678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 25677873 - 25678024
Alignment:
Q  64 tcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccattatgtcgccacttgcaccatatatatagaagacgtatggaaacatt 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  25677873 tcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccattatgtggtcacttgcaccatatatatagaagacgtatggaaacatt 25677972  T
Q  164 cgggagcagataagttgtcaaaaatcaagttcatcattttatattctattct 215  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25677973 ggggagcagataagttgtcaaaaatcaagttcattattttatattctattct 25678024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 216 - 480
Target Start/End: Original strand, 25617467 - 25617752
Alignment:
Q  216 gaaatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattct---ttc 312  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||   ||   |||    
T  25617467 gaaatctatttcctattaatatttccaacgctaatatcttgtttccctctcactttttactttgtatccctatggtttcttaatgtataggactgcattc 25617566  T
Q  313 tata-ggaat---------ccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggt-aatttgatgagcgacttgcgaa 401  Q
     | | || ||         |||||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||| ||||||||||||||||||| ||    
T  25617567 aaaaaggcatacttctcgcccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtaaatttgatgagcgacttgcaaa 25617666  T
Q  402 aaatactaaatttcaatcaatctt-------ttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 480  Q
    |||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25617667 aaatactatatttcaatcaatcttttcagacttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 25617752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 321 - 480
Target Start/End: Original strand, 25391715 - 25391874
Alignment:
Q  321 tccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttgatgagcgacttgcgaaaaatactaaatttcaatca 420  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||| ||||||||| |||||||||||||||||| ||||||||||    
T  25391715 tccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttgatgagagacttgcgaaaaatactatatttcaatca 25391814  T
Q  421 atcttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 480  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25391815 atctttcaagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 25391874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 216 - 325
Target Start/End: Original strand, 25391585 - 25391694
Alignment:
Q  216 gaaatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  25391585 gaaatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttatttctat 25391684  T
Q  316 aggaatccat 325  Q
    ||||||||||    
T  25391685 aggaatccat 25391694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 25358555 - 25358662
Alignment:
Q  217 aaatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctata 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||    
T  25358555 aaatctatttcctattaatatttccaacagtaatatattgtttacctctcgctttttactttgtatcccaatggtttcttaatgta-cagtctttctata 25358653  T
Q  317 ggaatccat 325  Q
    |||||||||    
T  25358654 ggaatccat 25358662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 25617131 - 25617278
Alignment:
Q  64 tcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccattatgtcgccacttgcaccatatatatagaagacgtatggaaacatt 163  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||| |||||   ||  ||||||||| |||||||| ||||||| |    
T  25617131 tcattgattgtgatatgagaaggtggcaacggtaatgtgtggaaattcttccagtgtgtggccac---cat-atatatataaaagacgtacggaaacaat 25617226  T
Q  164 cgggagcagataagttgtcaaaaatcaagttcatcattttatattctattct 215  Q
     ||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  25617227 ggggagcagataagttgtcaaaaatcaagttcattattttatattttattct 25617278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 25391309 - 25391400
Alignment:
Q  124 gccacttgcaccatatatatagaagacgtatggaaacattcgggagcagataagttgtcaaaaatcaagttcatcattttatattctattct 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  25391309 gccacttgcaccatatatatagaagacgtatggaaacattggggagcagataagttgtcaaaaatcaagttcattgttttatattctattct 25391400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 25358290 - 25358369
Alignment:
Q  136 atatatatagaagacgtatggaaacattcgggagcagataagttgtcaaaaatcaagttcatcattttatattctattct 215  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  25358290 atatatatagaagacgtatggaaacattggggatcagataagttgtcaaaaatcaagttcattgttttatattctattct 25358369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 25358683 - 25358747
Alignment:
Q  321 tccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttg 385  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||| ||||    
T  25358683 tccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttg 25358747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 25650344 - 25650387
Alignment:
Q  18 cttatattatcaatcaactcatacacctctctttgaactacacc 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25650344 cttatattatcaatcaactcatacacctctctttgaactacacc 25650387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 25358208 - 25358251
Alignment:
Q  18 cttatattatcaatcaactcatacacctctctttgaactacacc 61  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  25358208 cttatattatcaatcaactcatccacctctctttgaactacacc 25358251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 25677571 - 25677614
Alignment:
Q  18 cttatattatcaatcaactcatacacctctctttgaactacacc 61  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  25677571 cttatattatcaatcaactcatacacctctatttgaactacacc 25677614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 25391249 - 25391292
Alignment:
Q  18 cttatattatcaatcaactcatacacctctctttgaactacacc 61  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  25391249 cttatattatcaatcaactcatccacttctctttgaactacacc 25391292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 25616613 - 25616654
Alignment:
Q  20 tatattatcaatcaactcatacacctctctttgaactacacc 61  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  25616613 tatattatcaatcaattattacacctctctttgaactacacc 25616654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 321 - 480
Target Start/End: Complemental strand, 1029 - 870
Alignment:
Q  321 tccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttgatgagcgacttgcgaaaaatactaaatttcaatca 420  Q
    ||||||||||||||||||||||| |||||||||| | |||||| ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  1029 tccatatgaggagctctcaactcgtgtttttcaactcgtgagagtactattcttacggtattttgatgagcgacttgcgaaaaatactatatttcaatca 930  T
Q  421 atcttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  929 atcttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 1159 - 1050
Alignment:
Q  216 gaaatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctat 315  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  1159 gaaatctatttcctaataatattttcaacagtaatatcttgtttccctctcgctttttactttgtatcccaatggtttctaaatgtatagttctttctat 1060  T
Q  316 aggaatccat 325  Q
    |||| |||||    
T  1059 aggactccat 1050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 321 - 471
Target Start/End: Complemental strand, 8105 - 7955
Alignment:
Q  321 tccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttgatgagcgacttgcgaaaaatactaaatttcaatca 420  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  8105 tccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttatggtattttgatgagtgacttgcgaaaaatactatatttcaatca 8006  T
Q  421 atcttttcagtgtagccttttgcaactattctttccttgtgtccttcattg 471  Q
    || |||||||  |||||||||||||||||||||||||||||||||||||||    
T  8005 atattttcagcttagccttttgcaactattctttccttgtgtccttcattg 7955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 8230 - 8126
Alignment:
Q  221 ctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctataggaa 320  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||||     
T  8230 ctatttcctattaatatttccaacagtaatatcttgtttccctctcacttttcactttgtatcccaatggtttctaaatgtatagttctttctataggac 8131  T
Q  321 tccat 325  Q
    |||||    
T  8130 tccat 8126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 8499 - 8427
Alignment:
Q  146 aagacgtatggaaacattcgggagcagataa---gttgtcaaaaatcaagttcatcattttatattctattct 215  Q
    |||||||||||||||| | ||||||||||||   ||||||||||||||||||||| |||||||||||||||||    
T  8499 aagacgtatggaaacagtggggagcagataattagttgtcaaaaatcaagttcattattttatattctattct 8427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University