View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8524_low_9 (Length: 450)
Name: NF8524_low_9
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 183 - 432
Target Start/End: Complemental strand, 42173875 - 42173628
Alignment:
| Q |
183 |
ctccatttttgaagagccaaaacattacgtactctcttcagccattggaaatggttttggagtatatgcggagaagagtagctcagattaacactctttg |
282 |
Q |
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| T |
42173875 |
ctccatttttgaagagccaaa---ttacgtactctcttcagccattggaaacggttttggagtatatgcggagaagagtagctcagattaacactctttg |
42173779 |
T |
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| Q |
283 |
actgcgattgataattttaacacttttt-gaattgcacgttttgattttattgtgagaggtattgttgttggaatttgcccaaactattttgttgtgttc |
381 |
Q |
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| T |
42173778 |
actgcgattgataattttaatgcttttttgagttgcacgttttgattttattgtgagaggtattgtttttggaatttgcccaaactattttgttgtgtcc |
42173679 |
T |
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| Q |
382 |
tctgagttagcaagagtggcctataaatatggctaatcttaagtgtttgat |
432 |
Q |
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| T |
42173678 |
tctgagttagcaggagtggcctataaatatggttaatcttaagtgtttgat |
42173628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 42174071 - 42173935
Alignment:
| Q |
23 |
gggtattcttcaatgaaagcagcgagttatgatagttgaaatttgaaataaagagaaacttgcaaaaaatggcagaaatttaagtttagtggatgaagat |
122 |
Q |
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| T |
42174071 |
gggtattcttcaatgaaagcagcgagttatgatagttgaaatttgaaataaagagaaacttgcaaaaaatggcagaaatttaagtttagtggatgaagat |
42173972 |
T |
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| Q |
123 |
tatcatcatcaatagaaaccgaaacataaaaataaca |
159 |
Q |
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| T |
42173971 |
tatcatcatcaatagaaaccgaaacagaaaaataaca |
42173935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 11354170 - 11354225
Alignment:
| Q |
86 |
aaaaaatggcagaaatttaagtttagtggatgaagattatcatcatcaatagaaac |
141 |
Q |
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| T |
11354170 |
aaaaaatggcagaaatataggtttagtggatgaagattatcatcatcaatagaaac |
11354225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 29058000 - 29057947
Alignment:
| Q |
88 |
aaaatggcagaaatttaa--gtttagtggatgaagattatcatcatcaatagaa |
139 |
Q |
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| T |
29058000 |
aaaatggcagaaatatataggtttggtggatgaagattatcatcatcaatagaa |
29057947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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