View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8525_high_10 (Length: 239)

Name: NF8525_high_10
Description: NF8525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8525_high_10
NF8525_high_10
[»] chr4 (2 HSPs)
chr4 (13-218)||(49779533-49779738)
chr4 (13-218)||(7989567-7989770)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 49779533 - 49779738
Alignment:
Q  13 ataatactcattatcagaaaactaagaaagcaactctaatgtggttcttaattttaagaatctgttattaatttattcaatatttaagagaatcattcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49779533 ataatactcattatcagaaaactaagaaagcaactctaatgtggttcttaattttaagaatctgttattaatttattcaatatttaagagaatccttcta 49779632  T
Q  113 caagaacaagttcataacattaatttttcatttgaggttttaaagataaaggctcaatcgtggcatccattttaacttgaattcataagaattctactat 212  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49779633 taagaacaagttcataacattaatttttcatttgaggttttaaagataaaggctcaatcgtggcatccattttaacttgaattcataagaattcttctat 49779732  T
Q  213 tggagt 218  Q
    ||||||    
T  49779733 tggagt 49779738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 7989770 - 7989567
Alignment:
Q  13 ataatactcattatcagaaaactaagaaagcaactctaatgtggttcttaattttaagaatctgttattaatttattcaatatttaagagaatcattcta 112  Q
    ||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| |  ||    
T  7989770 ataatacccattatcagaaaactaagggagcaactctaatgtggttcttaattttaagaatctgttgttaatttatttaacatttaagagaatcct--ta 7989673  T
Q  113 caagaacaagttcataacattaatttttcatttgaggttttaaagataaaggctcaatcgtggcatccattttaacttgaattcataagaattctactat 212  Q
      ||||||||||   ||||| ||||||||| |  ||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  7989672 tgagaacaagttttaaacatcaatttttcactaaaggttttaaagatgaaggctcaatcgtagcatccattttaacttgagttcataagaattctactat 7989573  T
Q  213 tggagt 218  Q
    ||||||    
T  7989572 tggagt 7989567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University