View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8525_high_2 (Length: 435)
Name: NF8525_high_2
Description: NF8525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8525_high_2 |
 | |
|
| [»] scaffold0038 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 28328328 - 28328734
Alignment:
| Q |
19 |
atattagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328328 |
atattagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttc |
28328427 |
T |
|
| Q |
119 |
gagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggtttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328428 |
gagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggtttt |
28328527 |
T |
|
| Q |
219 |
gtgtttttattccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagatacaaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328528 |
gtgtttttattccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagatacaaaa |
28328627 |
T |
|
| Q |
319 |
ttttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatccttccatgg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328628 |
ttttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatccttccatgg |
28328727 |
T |
|
| Q |
419 |
ctctctg |
425 |
Q |
| |
|
||||||| |
|
|
| T |
28328728 |
ctctctg |
28328734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 28505964 - 28506370
Alignment:
| Q |
19 |
atattagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28505964 |
atattagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttc |
28506063 |
T |
|
| Q |
119 |
gagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggtttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506064 |
gagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggtttt |
28506163 |
T |
|
| Q |
219 |
gtgtttttattccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagatacaaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506164 |
gtgtttttattccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagatacaaaa |
28506263 |
T |
|
| Q |
319 |
ttttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatccttccatgg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506264 |
ttttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatccttccatgg |
28506363 |
T |
|
| Q |
419 |
ctctctg |
425 |
Q |
| |
|
||||||| |
|
|
| T |
28506364 |
ctctctg |
28506370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 425
Target Start/End: Original strand, 28246093 - 28246498
Alignment:
| Q |
26 |
acctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaat |
125 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
28246093 |
acctatcagaaaacaatttcacaattcttccagaatgcatcaaagattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaat |
28246192 |
T |
|
| Q |
126 |
tagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtt-t |
224 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
28246193 |
tagagggattccaccaaatttaaaacacttgtctgcaatacgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgttttgt |
28246292 |
T |
|
| Q |
225 |
tta-----ttccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagatacaaaat |
319 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| ||||||||||| || |||| | ||||| |||||||||||||| |||||||||| || |||| |
|
|
| T |
28246293 |
ttattgttttccttgtatttgacttaatattatataatattgtttactcaatgaattatttatggctaacaggaactgcatgaggctggaggaaccaaat |
28246392 |
T |
|
| Q |
320 |
tttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatccttccatggc |
419 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28246393 |
tttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggc |
28246492 |
T |
|
| Q |
420 |
tctctg |
425 |
Q |
| |
|
|||||| |
|
|
| T |
28246493 |
tctctg |
28246498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 425
Target Start/End: Original strand, 28239108 - 28239520
Alignment:
| Q |
22 |
ttagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgag |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||||||| |||||| ||| |
|
|
| T |
28239108 |
ttagacctatcaggaaataatttcacaattcttccagaatgcatcaaagattgtcgctttttaacggatcttatattggatgattgcaaatgccttagag |
28239207 |
T |
|
| Q |
122 |
aaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggtt----- |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
28239208 |
aaattagagggattccaccaaatttaaaacacttgtctgcaaaatactgcaaatcattgatttcctcggccagaaacatgctattgaatcaggttttttt |
28239307 |
T |
|
| Q |
217 |
----ttgtgtttttattccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagat |
312 |
Q |
| |
|
|| | ||| | ||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||| |||||||||| |
|
|
| T |
28239308 |
tttattttttttgttttccttgtatttgtcttaatattttataagattgtttactctatgaattatttatggctaacaggaactgcatgaggctggagga |
28239407 |
T |
|
| Q |
313 |
acaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatcctt |
412 |
Q |
| |
|
|| | |||||||||||||||||||| | ||||||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
28239408 |
accatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctccctt |
28239507 |
T |
|
| Q |
413 |
ccatggctctctg |
425 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28239508 |
ccatggctctctg |
28239520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 28524964 - 28525368
Alignment:
| Q |
19 |
atattagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttc |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| | |||| |||||||||||||||||||||| |
|
|
| T |
28524964 |
atattagacctatcaggaaataatttcacaattcttccagaatgcatcaaagattttcagtttttatatgctcttatattggatgattgcaagtgcctta |
28525063 |
T |
|
| Q |
119 |
gagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggtttt |
218 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||| |||||||||| | |||||||||| |||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
28525064 |
gagaaattagagggatgccgccaaatttagcatacttgtctgcaataggctgcaaatccttgacttcctcggccagaaacatgctattgaatcaggtttt |
28525163 |
T |
|
| Q |
219 |
gtgtttttattccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagatacaaaa |
318 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||| | || | ||||| |||||||||||||| |||||||||| || | |
|
|
| T |
28525164 |
tttttttcc--ccttgtatttgacttaatattttataagattgtttactctatgatttatttatggctaacaggaactgcatgaggctggaggaaccagg |
28525261 |
T |
|
| Q |
319 |
ttttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatccttccatgg |
418 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| | |||||||| | |
|
|
| T |
28525262 |
ttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacatgggacatacaatttctttttggtttcgtaacaacctcccttccattg |
28525361 |
T |
|
| Q |
419 |
ctctctg |
425 |
Q |
| |
|
||||||| |
|
|
| T |
28525362 |
ctctctg |
28525368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 22 - 406
Target Start/End: Original strand, 28191134 - 28191524
Alignment:
| Q |
22 |
ttagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgag |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||| | |||| |||||||||||||||||||||| ||| |
|
|
| T |
28191134 |
ttagacctatcaggaaataatttcacaattcttccagaatgcatcaaagattgtcaccttttatcggatcttatattggatgattgcaagtgccttagag |
28191233 |
T |
|
| Q |
122 |
aaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgt- |
220 |
Q |
| |
|
|||||||||||||||||| |||||||| | | ||||||||| | |||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
28191234 |
aaattagagggattccactaaatttaacaaacttgtctgcagcaaactgcaaatcattgacttcctcgtgtagaaacatgctattgaatcaggttttgtt |
28191333 |
T |
|
| Q |
221 |
------gtttttattccttgtatttgacttaatattttataagattgtttactctatcaat--tctat--atggttaacaggaactgcacgaggctggag |
310 |
Q |
| |
|
||| | |||||||||||| |||||||||| | |||||||||||||| || | ||| |||| |||||||| || || |||||||||| |
|
|
| T |
28191334 |
ttattcttttgttttccttgtatttcacttaatatt-----atattgtttactctatatatgatttattaatggctaacaggatcttcatgaggctggag |
28191428 |
T |
|
| Q |
311 |
atacaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagc |
406 |
Q |
| |
|
| | |||||| ||| |||||||||||| ||||||||||||||||| |||| ||| |||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
28191429 |
gaaaagaattttatttgccaggatttgcaaggattccagagtggtttgatcaccgaaacatgggacataaattttctttttggtttcgtaacaagc |
28191524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 2170950 - 2170831
Alignment:
| Q |
101 |
atgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacat |
200 |
Q |
| |
|
|||||||||||| || | |||||||| ||||||||| |||| |||||||| ||||||||| | |||||| |||||||||||||| || | || ||| |
|
|
| T |
2170950 |
atgattgcaagtatctccaagaaattacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcat |
2170851 |
T |
|
| Q |
201 |
gctattgaatcaggttttgt |
220 |
Q |
| |
|
|||| | | ||||||||||| |
|
|
| T |
2170850 |
gctacttactcaggttttgt |
2170831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 27074279 - 27074337
Alignment:
| Q |
343 |
attccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaa |
401 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||| ||||||||||||||||| |||| |
|
|
| T |
27074279 |
attccagattggtttgagcaccgaagcatgggaaatgcaatttctttttggtttagtaa |
27074337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 29829103 - 29829165
Alignment:
| Q |
344 |
ttccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagc |
406 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
29829103 |
ttccagagtggtttgagcaccaaaatagggggccatcaatatctttttggtttcgtaacaagc |
29829165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 26638197 - 26638240
Alignment:
| Q |
120 |
agaaattagagggattccaccaaatttaaaatatttgtctgcaa |
163 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
26638197 |
agaaattagagggattccaccaaatctaaattacttgtctgcaa |
26638240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 26744163 - 26744206
Alignment:
| Q |
120 |
agaaattagagggattccaccaaatttaaaatatttgtctgcaa |
163 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
26744163 |
agaaattagagggattccaccaaatctaaattacttgtctgcaa |
26744206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 26625928 - 26625970
Alignment:
| Q |
121 |
gaaattagagggattccaccaaatttaaaatatttgtctgcaa |
163 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
26625928 |
gaaattagagggattccaccaaatctaaattacttgtctgcaa |
26625970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 26731905 - 26731947
Alignment:
| Q |
121 |
gaaattagagggattccaccaaatttaaaatatttgtctgcaa |
163 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
26731905 |
gaaattagagggattccaccaaatctaaattacttgtctgcaa |
26731947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 28142443 - 28142509
Alignment:
| Q |
96 |
attggatgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgca |
162 |
Q |
| |
|
||||||| |||| |||| |||| ||||||||| |||||||| |||||||||||| || |||||||| |
|
|
| T |
28142443 |
attggataattgtaagtctcttcaagaaattagggggattccgccaaatttaaaacatgtgtctgca |
28142509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 26952641 - 26952698
Alignment:
| Q |
343 |
attccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgta |
400 |
Q |
| |
|
|||||||| |||||||||||||||| | |||| | ||||||||||| |||||||||| |
|
|
| T |
26952641 |
attccagattggtttgagcaccaaaccaggggagacacaatttctttctggtttcgta |
26952698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 2187668 - 2187792
Alignment:
| Q |
101 |
atgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacat |
200 |
Q |
| |
|
|||||||||||| || | |||||||| ||||||||| |||| ||||||| |||||||||| | ||||| ||| |||||||||| || | || ||| |
|
|
| T |
2187668 |
atgattgcaagtatctccaagaaattacagggattccgccaagtttaaaacgtttgtctgcattacaatgcaattcactgacttcctcatgtagaagcat |
2187767 |
T |
|
| Q |
201 |
gctattgaatcaggttttgtgtttt |
225 |
Q |
| |
|
|||| | | ||||||||||| |||| |
|
|
| T |
2187768 |
gctacttagtcaggttttgtatttt |
2187792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 26851306 - 26851402
Alignment:
| Q |
121 |
gaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttt |
217 |
Q |
| |
|
|||||||||||||||||||| ||| |||| || ||||||||| | ||||||||||||| |||||| ||| || ||| |||||| |||||||| |
|
|
| T |
26851306 |
gaaattagagggattccaccgaatctaaattacctgtctgcaatagattgcaaatcattgagttcctcaagcagaagaatgttattgagtcaggttt |
26851402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 425
Target Start/End: Original strand, 46255 - 46660
Alignment:
| Q |
26 |
acctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaat |
125 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
46255 |
acctatcagaaaacaatttcacaattcttccagaatgcatcaaagattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaat |
46354 |
T |
|
| Q |
126 |
tagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgtgtt-t |
224 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
46355 |
tagagggattccaccaaatttaaaacacttgtctgcaatacgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgttttgt |
46454 |
T |
|
| Q |
225 |
tta-----ttccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagatacaaaat |
319 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| ||||||||||| || |||| | ||||| |||||||||||||| |||||||||| || |||| |
|
|
| T |
46455 |
ttattgttttccttgtatttgacttaatattatataatattgtttactcaatgaattatttatggctaacaggaactgcatgaggctggaggaaccaaat |
46554 |
T |
|
| Q |
320 |
tttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatccttccatggc |
419 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46555 |
tttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggc |
46654 |
T |
|
| Q |
420 |
tctctg |
425 |
Q |
| |
|
|||||| |
|
|
| T |
46655 |
tctctg |
46660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 425
Target Start/End: Original strand, 39270 - 39682
Alignment:
| Q |
22 |
ttagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgag |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||||||| |||||| ||| |
|
|
| T |
39270 |
ttagacctatcaggaaataatttcacaattcttccagaatgcatcaaagattgtcgctttttaacggatcttatattggatgattgcaaatgccttagag |
39369 |
T |
|
| Q |
122 |
aaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggtt----- |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
39370 |
aaattagagggattccaccaaatttaaaacacttgtctgcaaaatactgcaaatcattgatttcctcggccagaaacatgctattgaatcaggttttttt |
39469 |
T |
|
| Q |
217 |
----ttgtgtttttattccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagat |
312 |
Q |
| |
|
|| | ||| | ||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||| |||||||||| |
|
|
| T |
39470 |
tttattttttttgttttccttgtatttgtcttaatattttataagattgtttactctatgaattatttatggctaacaggaactgcatgaggctggagga |
39569 |
T |
|
| Q |
313 |
acaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatcctt |
412 |
Q |
| |
|
|| | |||||||||||||||||||| | ||||||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
39570 |
accatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctccctt |
39669 |
T |
|
| Q |
413 |
ccatggctctctg |
425 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39670 |
ccatggctctctg |
39682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 424
Target Start/End: Complemental strand, 55679 - 55271
Alignment:
| Q |
22 |
ttagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgag |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
55679 |
ttagacctatcaggaaataatttcacaattcttccggaatgcatgaaagattgtcgctttttgtggtttcttaaattggatgattgcaagtgccttcgag |
55580 |
T |
|
| Q |
122 |
aaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttg-- |
219 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55579 |
aaattagagggattccaccaaatgtaaaacacttgtctgcaatacgctgcaaatcattgacttcctcgtgcaaacacatgctattgaatcaggttttgtt |
55480 |
T |
|
| Q |
220 |
-tgtttt---tattccttgtatttgacttaatattttataagattgtttactctatcaattctatatggttaacaggaactgcacgaggctggagataca |
315 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||||| | |||||||||| | | || | ||||| |||||||| |||| ||||||||| | || |
|
|
| T |
55479 |
ttgttttttgttttccttgtatttgacttaatattatataatactgtttactctttgatttatttatggctaacaggatatgcatgaggctggacaaacc |
55380 |
T |
|
| Q |
316 |
aaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaacaagcatccttcca |
415 |
Q |
| |
|
| |||||||| | |||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
55379 |
atgttttgtttgccgggatttgcaaggattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgtaacaagctcccttcca |
55280 |
T |
|
| Q |
416 |
tggctctct |
424 |
Q |
| |
|
|||||||| |
|
|
| T |
55279 |
cggctctct |
55271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 16693894 - 16694034
Alignment:
| Q |
22 |
ttagacctatcaggaaatagtttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgag |
121 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||| |||||||| || | ||||||| | ||||| ||| |||| |||| || ||||||| |
|
|
| T |
16693894 |
ttagacctatcgaggaatagtttcacaatacttccagaatttatcaaagaatgccactttttgattacgcttaatttgaatgactgcacatgtcttcgag |
16693993 |
T |
|
| Q |
122 |
aaattagagggattccaccaaatttaaaatatttgtctgca |
162 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
16693994 |
aaattagagggattcctccaaatttaaaacgtttgtctgca |
16694034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 5088454 - 5088354
Alignment:
| Q |
42 |
tttcacaattcttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccacca |
141 |
Q |
| |
|
||||| |||||||||||||||| ||||||| ||||||||| | | || ||| |||| |||| ||||||| |||| |||||||||||||||||| ||| |
|
|
| T |
5088454 |
tttcaaaattcttccagaatgcctcaaagaatgtcgctttctatggagccttcaattgaatgaatgcaagtctcttcaagaaattagagggattcctcca |
5088355 |
T |
|
| Q |
142 |
a |
142 |
Q |
| |
|
| |
|
|
| T |
5088354 |
a |
5088354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 12311 - 12430
Alignment:
| Q |
101 |
atgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacat |
200 |
Q |
| |
|
|||||||||||| || | |||||||| ||||||||| |||| |||||||| ||||||||| | |||||| |||||||||||||| || | || ||| |
|
|
| T |
12311 |
atgattgcaagtatctccaagaaattacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcat |
12410 |
T |
|
| Q |
201 |
gctattgaatcaggttttgt |
220 |
Q |
| |
|
|||| | | ||||||||||| |
|
|
| T |
12411 |
gctacttactcaggttttgt |
12430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 265446 - 265391
Alignment:
| Q |
346 |
ccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaa |
401 |
Q |
| |
|
||||| |||||||||||||||| | |||||| ||||||||||| ||||||||||| |
|
|
| T |
265446 |
ccagattggtttgagcaccaaagcaagggaaacacaatttctttctggtttcgtaa |
265391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 26138796 - 26138892
Alignment:
| Q |
121 |
gaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttt |
217 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | || ||||||| | ||||| |||||||||||||| || | || ||| |||||| |||||||| |
|
|
| T |
26138796 |
gaaattaaagggattccaccaaatctaaaaaagttttctgcaatacaatgcaagtcattgacttcctcatgtataaggatgttattgagtcaggttt |
26138892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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