View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8525_high_7 (Length: 318)
Name: NF8525_high_7
Description: NF8525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8525_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 32763279 - 32763577
Alignment:
| Q |
1 |
tcgaaacagaatgtaagccggtcgctgagtccctaatagatagtgtaacttatcttactatatttgttaaaatcaaatacataaacataacattaatgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32763279 |
tcgaaacagaatgtaagccggtcgctgagtccctaatagatagtgtaacttatcttactatatttgttaaaatcaaatacataaacataacataaatgag |
32763378 |
T |
|
| Q |
101 |
aatatcaaaatcataaaatacttgcaaataactttgcaagcatcaaaataaccaaagtttcagggcttaaaattgcttaaaatgcttgcaagcataaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32763379 |
aatatcaaaatcataaaatacttgcaaataactttgcaagcatcaaaataaccaaagtttcagggcttaaaattgcataaaatgcttgcaagcataaaaa |
32763478 |
T |
|
| Q |
201 |
agaaataaccaaagtacaaggtcctaaattaactaaagtcacagctcacaaaataacaaggttcaagagcctaaatgcatcaaaatcataagttaggct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32763479 |
agaaataaccaaagtacaaggtcctaaattaactaaagtcacagctcacaaaataacaaggttcaagagcctaaatgcatcaaaatcataagttaggct |
32763577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 16914899 - 16914955
Alignment:
| Q |
222 |
tcctaaattaactaaagtcacagctcacaaaataacaaggttcaagagcctaaatgc |
278 |
Q |
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||||||||||||| |||| | ||||||||||||||||||||||||| |||||||| |
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| T |
16914899 |
tcctaaattaacttaagttattgctcacaaaataacaaggttcaagatgctaaatgc |
16914955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 29603497 - 29603459
Alignment:
| Q |
244 |
gctcacaaaataacaaggttcaagagcctaaatgcatca |
282 |
Q |
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| T |
29603497 |
gctcacaaaataacaaggttcagaagcctaaatgcatca |
29603459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 2599199 - 2599231
Alignment:
| Q |
244 |
gctcacaaaataacaaggttcaagagcctaaat |
276 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
2599199 |
gctcacaaaataataaggttcaagagcctaaat |
2599231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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