View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8525_low_1 (Length: 652)
Name: NF8525_low_1
Description: NF8525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8525_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 24110165 - 24109897
Alignment:
| Q |
18 |
gataccgttaagagaagactgactgatactctct--tccctttatcggaacacttttgcagctcattgtattgattggatacttgaagattttggaaacc |
115 |
Q |
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| T |
24110165 |
gatacggttaagaaaagactgactgatactctctcctccctttatcggaaaacttttgcagctcattgcattgattggatacttgaagattttggaaacc |
24110066 |
T |
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| Q |
116 |
ttgactggattagtacagtaattaaacaagctaaataatattctgtaaggaatctctgtaaatttttgttcatttgtttacattttgtaaggatactaga |
215 |
Q |
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| T |
24110065 |
ttgactggattagtacagtaattaaacaagctaaataatattctgtaatgaatctctgtaaatttttgttcatttgtttacattttgtaaggatactaga |
24109966 |
T |
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| Q |
216 |
gttattggtgatgatcatattcatatccagttgcaagattgtttaccagtaaaaggtagatggtagaga |
284 |
Q |
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| T |
24109965 |
gttattggtgatgatcatattcatatccggttgcaagattgtttaccagtaaaaggtagatggtagaga |
24109897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 290 - 508
Target Start/End: Complemental strand, 24109815 - 24109595
Alignment:
| Q |
290 |
aaaaagtacaagccat---ttaaatagaattgtgtagcaataactgttgcaattttctctagatgtcacttgcttgtaagattctctcttctaccttatg |
386 |
Q |
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| T |
24109815 |
aaaaagtacaagccatcagttaaatagaattgtgtagcaataactgttgccattttctttagatgtcacttgcttgtaagattctctcttctaccttatg |
24109716 |
T |
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| Q |
387 |
gtactcggttcaagacttggttcaccttgggattgagaaagaacgaagaatatatgtgaggtctgttaaaatgcctcttcttttattatcatttccattc |
486 |
Q |
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| T |
24109715 |
gtactcggttcaagacttggcacacctt-ggattgaaaaagaacgaagaatatatgtggggtattttaaaatgcctcttctattattatcatttccattc |
24109617 |
T |
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| Q |
487 |
tgttactcaatcattcagacaa |
508 |
Q |
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| T |
24109616 |
ttttactcaatcattcagacaa |
24109595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 4274846 - 4274926
Alignment:
| Q |
355 |
cttgcttgtaagattctctcttctaccttatggtactcggttcaagacttggttcaccttgggattgagaaagaacgaaga |
435 |
Q |
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| T |
4274846 |
cttgcttgtaagattctctcttcaaccttatggtactcagttcaaaacttggcacgccttgggattgagaaagaacgaaga |
4274926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 4274745 - 4274805
Alignment:
| Q |
224 |
tgatgatcatattcatatccagttgcaagattgtttaccagtaaaaggtagatggtagaga |
284 |
Q |
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| T |
4274745 |
tgatgatcatattcatatccagctgcaagattgtttactagtgaaaggtagatggtagaga |
4274805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 4274689 - 4274722
Alignment:
| Q |
185 |
tcatttgtttacattttgtaaggatactagagtt |
218 |
Q |
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| T |
4274689 |
tcatttgtttacattttgtaaggatactagagtt |
4274722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 30656481 - 30656578
Alignment:
| Q |
54 |
cctttatcggaacacttttgcagctcattgtattgattggatacttgaagattttggaaaccttgactggattagtacagtaattaaacaagctaaat |
151 |
Q |
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| T |
30656481 |
cctttattggagcccttctgcggctcattgcattgatttgatacttgaagattttggaaatattgagtggattagtacagttattgaacaggctaaat |
30656578 |
T |
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