View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8525_low_15 (Length: 222)
Name: NF8525_low_15
Description: NF8525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8525_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 5130077 - 5129891
Alignment:
| Q |
18 |
agttttttccttgtcccaacagattgtggaaagtacacattcttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaagac |
117 |
Q |
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| T |
5130077 |
agttttttccttgtcccaacagattgtggaaagtacacattcttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaagac |
5129978 |
T |
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| Q |
118 |
tgaagaattcaacgaagagcccacttcttaagaatagtactgtatgtgtgttttctcattgattggtattctgactcctgcttagta |
204 |
Q |
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| T |
5129977 |
tgaagaattcaacgaagagcccacttcttaagaatagtattgtatgtgtattttctcattgattggtattctgactcctgcttagta |
5129891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 26324397 - 26324453
Alignment:
| Q |
60 |
ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga |
116 |
Q |
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| T |
26324397 |
ttcatcatcttatggtgacttgataaatatatcttcctccttatctgatggtgaaga |
26324453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 8528094 - 8528038
Alignment:
| Q |
60 |
ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga |
116 |
Q |
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| T |
8528094 |
ttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaaga |
8528038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 9442261 - 9442205
Alignment:
| Q |
60 |
ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga |
116 |
Q |
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| T |
9442261 |
ttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaaga |
9442205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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