View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8525_low_2 (Length: 461)
Name: NF8525_low_2
Description: NF8525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8525_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 26265053 - 26265497
Alignment:
| Q |
1 |
aagaactagaaaacatggttttaaattgtggtccgcatatgcagttgtggctgcacttacggttttaaattgcggatgcgattatgttgtgaacctttct |
100 |
Q |
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| T |
26265053 |
aagaactagaaaacatggttttaaattgtggtccacatacgcagttgtggctgcacttacggttttaaattgcggatgcgattatgttgtgaacctttct |
26265152 |
T |
|
| Q |
101 |
attatggtaaaatgcagttgatgtagtcgaaattgtagttgcagtgacttcaaaatcttcaatatatattgcggccacatttgcagttgtaaacagaagt |
200 |
Q |
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| T |
26265153 |
attatagtaaaatgcagttgatgtagtcgaaattgcagttgcagtgacttcaaaatcttcaatatatattgcggccacatttgcagttgtaaacagaagt |
26265252 |
T |
|
| Q |
201 |
ttaaaaccatggtggccgcaatataaagggttatgagatttatgcatcgtaactgcaatttcgactactttagctgcattttgatgcaatatgaaggttc |
300 |
Q |
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| T |
26265253 |
ttaaaaccatggtggccgcaatataaagggttatgagatttatgcatcgtaactgcaatttcgactactttagctgcattttgatgcaatatgaaggttc |
26265352 |
T |
|
| Q |
301 |
acattataaccacaaccacaatttaaaattatataagaaagaacaaggagtataaaatgggattgatccatnnnnnnnnnnnnnnnnnnnnnnncaaggg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26265353 |
acattataaccacaaccacaatttaaaattatataagaaagaacaaggagtataaaatgggattgatccataaaaagaaaagaggaaaaaaaaacaaggg |
26265452 |
T |
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| Q |
401 |
aaatcataaatgaagttagtatagttaatgatgtgttatagtaat |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26265453 |
aaatcataaatgaagttagtatagttaatgatgtgttatagtaat |
26265497 |
T |
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