View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8525_low_5 (Length: 417)
Name: NF8525_low_5
Description: NF8525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8525_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 29321344 - 29321736
Alignment:
| Q |
18 |
ccatttgtagtgagcgatttgaacaagaagaccccatggtagaaagcatctaacatcccagcagtaatacaattcttatcatcaacatcataccaaagag |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29321344 |
ccatctgtagtgagcgatttgaacaagaagaccccaaggtagaaagcatctaacatcccagcagtaatacaattcttatcatcaacatcataccaaagag |
29321443 |
T |
|
| Q |
118 |
gatcatcaataacacacgacaacatgttcacagcaaccgtcactacccttctcacttcctcatgagaaagattttttatccaacttcccatctccttcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29321444 |
gatcatcaataacacacgacaacatgttcacagcaaccgtaactacccttctcacttcctcatgagaaagattttttatcaaacttcccatctccttcaa |
29321543 |
T |
|
| Q |
218 |
gttctctgaaccaacatctttgatcacacaaaccgcataaaatttaagttcttcgctcacatcttctacctccgttactcgaatcatgcaccaaaacact |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29321544 |
gttcgctgaaccaacatctttgatcacacaaaccgcataaaatttaagttcttcgctcacatcttctacctctgttactcgaatcatgcaccaaaacact |
29321643 |
T |
|
| Q |
318 |
tcaccaagtttccctttaaagatatttccatcatccagcttagctaaatcccataaacgtttaatccgattccccagaatctctgcttctcca |
410 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29321644 |
tcaccaagtttccccttaaagatatttccatcatccagcttagctaaatcccataaacgtttaatccgattccccagaatctcttcttctcca |
29321736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 270 - 409
Target Start/End: Original strand, 29304410 - 29304549
Alignment:
| Q |
270 |
tcgctcacatcttctacctccgttactcgaatcatgcaccaaaacacttcaccaagtttccctttaaagatatttccatcatccagcttagctaaatccc |
369 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||||| ||| |||| |||| |
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| T |
29304410 |
tcgctcacatcttctacctccgctactcgaatcatgcaccaaaacacttcaccatgtttccccatgaagatacttccatcatccaatttaactaattccc |
29304509 |
T |
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| Q |
370 |
ataaacgtttaatccgattccccagaatctctgcttctcc |
409 |
Q |
| |
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| ||||| ||||||| |||| |||||| |||| ||||||| |
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| T |
29304510 |
acaaacgattaatcctattcaccagaacctcttcttctcc |
29304549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 29332602 - 29332707
Alignment:
| Q |
85 |
tacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaacatgttcacagcaaccgtcactacccttctcacttcctcatgaga |
184 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||| |||||||| | |||||| |||||||||| |||| |
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| T |
29332602 |
tacaattcttatcatccacatcataccaaagaggatcatcaataacacacgatagcatcttcatagcaaccgcaaataccctcttcacttcctccagaga |
29332701 |
T |
|
| Q |
185 |
aagatt |
190 |
Q |
| |
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|||||| |
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| T |
29332702 |
aagatt |
29332707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 29304198 - 29304303
Alignment:
| Q |
40 |
acaagaagaccccatggtagaaagcatctaacatcccagcagtaatacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaa |
139 |
Q |
| |
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|||||||||||||| | || |||||||| ||| |||||||||| || ||||| || || ||||||||||||||||||||||||| || ||||||||| |
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| T |
29304198 |
acaagaagaccccacgataataagcatctgccattccagcagtaagacgattctcatggtccacatcataccaaagaggatcatcaacaatacacgacaa |
29304297 |
T |
|
| Q |
140 |
catgtt |
145 |
Q |
| |
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|||||| |
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| T |
29304298 |
catgtt |
29304303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 29295155 - 29295194
Alignment:
| Q |
85 |
tacaattcttatcatcaacatcataccaaagaggatcatc |
124 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
29295155 |
tacaattcttatcatcaacatcataccaaacaggatcatc |
29295194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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