View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8525_low_7 (Length: 364)
Name: NF8525_low_7
Description: NF8525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8525_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 28693737 - 28693394
Alignment:
| Q |
1 |
agagcacatcatcagatacatcactataaatagagtgtctccttacatgtatgatcacacatatattactcatcccacttttacttgtattgatatcgat |
100 |
Q |
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| T |
28693737 |
agagcacatcatcagatacatcactataaataaagtgtctccttgcatgtatgatcacacatatattactcatcccacttttacttgtattgatatcgat |
28693638 |
T |
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| Q |
101 |
ctaccagcaccttacttatttggacaagcataccctggttcccctgtttggagaaggagcatatgactagtcgaagtgaatctattcatcagtgtgaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
28693637 |
ctaccagcaccttacttatttggacaagcataccct----cccctgtttggagaaggagcatatgactagtcgcagtgaatctgttcatcagtgtgaaga |
28693542 |
T |
|
| Q |
201 |
ccacacctcctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693541 |
ccacacctcctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgttcc |
28693442 |
T |
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| Q |
301 |
aaagtgatcaacaaataggcatatgtcaaaataaaaatgttgtacatg |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693441 |
aaagtgatcaacaaataggcatatgtcaaaataaaaatgttgtacatg |
28693394 |
T |
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