View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8525_low_9 (Length: 306)

Name: NF8525_low_9
Description: NF8525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8525_low_9
NF8525_low_9
[»] chr4 (3 HSPs)
chr4 (26-295)||(6115057-6115326)
chr4 (19-292)||(6114207-6114471)
chr4 (26-128)||(6114938-6115040)
[»] chr3 (1 HSPs)
chr3 (26-111)||(16253553-16253638)
[»] chr7 (4 HSPs)
chr7 (26-144)||(45638356-45638474)
chr7 (26-150)||(45639017-45639141)
chr7 (26-149)||(43302490-43302613)
chr7 (26-71)||(7818490-7818535)
[»] chr2 (3 HSPs)
chr2 (35-119)||(32566740-32566824)
chr2 (32-202)||(32567521-32567692)
chr2 (26-75)||(27006991-27007040)
[»] chr1 (2 HSPs)
chr1 (26-143)||(46315329-46315446)
chr1 (26-71)||(52381736-52381781)
[»] chr6 (1 HSPs)
chr6 (26-75)||(8172139-8172188)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 26 - 295
Target Start/End: Original strand, 6115057 - 6115326
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagattaaagatgggtttaagtg 125  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||    
T  6115057 catatcaagtgagaataacatttatatgtaagaatggtaggaataaataatagccatcagattagaaaggaagagctaagattaaagatgggtttaagtg 6115156  T
Q  126 agttgatgtacccaatctccaaattttcttcactttcatgtgttaattcgcactctcccccgaatccccaaattcttccccataattactcatcttcttc 225  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||||    
T  6115157 agttgatgtacccaatctccaaattttcttcactttcacgtgttagttcacactcccctccgaatccccaaattcttccccataattactcatcttcttc 6115256  T
Q  226 ctctagccctcataccttccacactttcggaacatcccataaactcaaattaaaatacaaattcattcat 295  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6115257 ctgtagccctcataccttccacactttcggaacatcccataaactcaaattaaaatacaaattcattcat 6115326  T

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Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 6114207 - 6114471
Alignment:
Q  19 agcatatcatatcaaatgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagattaaagatgggt 118  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||||| |||||||| |||| ||| |||||||||||||||| |||||||||||||||||    
T  6114207 agcatatcatatcaaatgagaataatatttatatgtaaaaatggtagaaataaatagtagctatcagattagaaaggaagagttgagattaaagatgggt 6114306  T
Q  119 ttaagtgagttgatgtacccaatctccaaattttcttcactttcatgtgttaattcgcactctcccccgaatccccaaattcttccccataattactcat 218  Q
    | ||||||| |||||||||||||||||||||||||||| |||||| |  ||| ||| |||||         |||||||||||||||||||||| ||||||    
T  6114307 tgaagtgagatgatgtacccaatctccaaattttcttctctttcacgcattagttcacactc---------tccccaaattcttccccataatcactcat 6114397  T
Q  219 cttcttcctctagccctcataccttccacactttcggaacatcccataaactcaaattaaaatacaaattcatt 292  Q
    ||||||||||||||||||||||||||||||||| ||||||| || | |||||| |||||||| |||||| ||||    
T  6114398 cttcttcctctagccctcataccttccacacttccggaacagcctaaaaactcgaattaaaacacaaatccatt 6114471  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 6115040 - 6114938
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagattaaagatgggtttaagtg 125  Q
    |||||||| |||||||||||||||||| | ||||||||||||||||||| ||| |||| ||||| |||||||||| ||| ||||||||||||||||||||    
T  6115040 catatcaagtgagaataacatttatatgtgagaatggtaggaataaatagtaggcatcagattaaaaaggaagagctgatattaaagatgggtttaagtg 6114941  T
Q  126 agt 128  Q
    |||    
T  6114940 agt 6114938  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 16253553 - 16253638
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagattaaa 111  Q
    ||||||| |||||||| | |||||||||| ||||||||| ||||||||  | |||||| ||||| |||||||| ||||||||||||    
T  16253553 catatcacatgagaatgatatttatatatgagaatggtaagaataaattgtggccatcagattaaaaaggaagggatgagattaaa 16253638  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 45638356 - 45638474
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagattaaa-gatgggtttaagt 124  Q
    ||||||| |||||||| | |||||||| | ||||| ||| ||||||||  | |||||| ||||| |||||||| |||||||||||| ||| ||||||| |    
T  45638356 catatcacatgagaatgatatttatatgtgagaatagtaagaataaattgtggccatcagattaaaaaggaagggatgagattaaatgat-ggtttaaat 45638454  T
Q  125 gagttgatgtacccaatctc 144  Q
    |  ||| |||||||||||||    
T  45638455 ggcttgttgtacccaatctc 45638474  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 45639141 - 45639017
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagattaaa-gatgggtttaagt 124  Q
    ||||||| |||| ||| | |||||||| | ||||||||| ||||||||  | |||||| ||||| ||||||||  ||||||||||| ||| ||||||| |    
T  45639141 catatcacatgaaaatgatatttatatgtgagaatggtaagaataaattgtggccatcagattaaaaaggaaggtatgagattaaatgat-ggtttaaat 45639043  T
Q  125 gagttgatgtacccaatctccaaatt 150  Q
       ||| |||||||||||||||||||    
T  45639042 agcttgttgtacccaatctccaaatt 45639017  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 43302490 - 43302613
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagatta-aagatgggtttaagt 124  Q
    |||||||| ||| ||| |||||| ||| | ||||||| |||| |||||  ||||||||  |||  |||||||  | |||||||| |||||||||| ||||    
T  43302490 catatcaagtgaaaattacatttgtatgtgagaatgggaggactaaattgtagccatcaaattcaaaaggaatggttgagattagaagatgggtt-aagt 43302588  T
Q  125 gagttgatgtacccaatctccaaat 149  Q
    | |||| ||||||||||||||||||    
T  43302589 gggttgttgtacccaatctccaaat 43302613  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 7818535 - 7818490
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataa 71  Q
    ||||||| |||||||| ||| ||||||||||||||| |||||||||    
T  7818535 catatcacatgagaatgacaattatatataagaatgataggaataa 7818490  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 32566740 - 32566824
Alignment:
Q  35 tgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagattaaagatgggtt 119  Q
    |||||||||||||| ||| | |||||| ||  |||||||  ||||| || ||||||||||||||   ||||||||||||||||||    
T  32566740 tgagaataacatttgtatgtgagaatgataaaaataaatggtagccgtcagattagaaaggaaggattgagattaaagatgggtt 32566824  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 32567692 - 32567521
Alignment:
Q  32 aaatgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagatt-aaagatgggtttaagtgagttg 130  Q
    |||||||||||| |||| ||| | ||||||||| ||||||||  |||||||| ||||| |||||||    ||||||| ||||||| | ||||| ||| ||    
T  32567692 aaatgagaataatatttgtatgtgagaatggtaagaataaatggtagccatcagattaaaaaggaacgattgagattaaaagatgag-ttaagcgagctg 32567594  T
Q  131 atgt-acccaatctccaaattttcttcactttcatgtgttaattcgcactctcccccgaatccccaaattctt 202  Q
     ||| |||||||||| ||||| ||||| | |||| | |||| ||| ||||||||||  | ||||||| |||||    
T  32567593 ttgtaacccaatctctaaattatcttctcattcacgcgttagttctcactctccccttattccccaatttctt 32567521  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 27007040 - 27006991
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataaataa 75  Q
    ||||||||||||||||||||| | ||| | |||||| |||||||||||||    
T  27007040 catatcaaatgagaataacatatttatgtgagaatgataggaataaataa 27006991  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 46315446 - 46315329
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataaataatagccatcggattagaaaggaagagatgagatt-aaagatgggtttaagt 124  Q
    ||||||| |||||||| | |||||||| | ||||||||||||||||||  || ||||  ||||| || | ||| | ||||||| ||||||||| |||| |    
T  46315446 catatcacatgagaatgatatttatatgtgagaatggtaggaataaattgtatccattagattaaaatgaaagggctgagattaaaagatggg-ttaaat 46315348  T
Q  125 gagttgatgtacccaatct 143  Q
    |||||| || |||||||||    
T  46315347 gagttgttgcacccaatct 46315329  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 52381781 - 52381736
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataa 71  Q
    ||||||| |||||||| ||| ||||||||||||||| |||||||||    
T  52381781 catatcacatgagaatgacaattatatataagaatgataggaataa 52381736  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 8172139 - 8172188
Alignment:
Q  26 catatcaaatgagaataacatttatatataagaatggtaggaataaataa 75  Q
    ||||||||||||||||||||| | ||| | |||||| |||||||||||||    
T  8172139 catatcaaatgagaataacatatttatgtgagaatgataggaataaataa 8172188  T

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