View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8526_high_12 (Length: 254)
Name: NF8526_high_12
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 29450924 - 29451109
Alignment:
| Q |
18 |
aaaatcatgtatacaattgtgaggtggttttaacctggctgaatgtgtacaaaacctcactttaatcttgtccgttagcttgctcatttgttccttttta |
117 |
Q |
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| T |
29450924 |
aaaatcatgtatataattgtgaggtggttttaacctgactgaatgtgtacaaaacctcactttaatcttgtccgttagcttgctcatttattccttttta |
29451023 |
T |
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| Q |
118 |
gttggtgtagaaaataatacactagtgttaaaaccatgtcaacaccaacttaatgtctggttcaattttgattaccttacaaaaat |
203 |
Q |
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| T |
29451024 |
gttggtgtagaaaataatacactagtgttaaaaccatgtcaacaccaatttaatgtctggttcaattttgattaccttacaaaaat |
29451109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 29451324 - 29451359
Alignment:
| Q |
212 |
aaaccaagccattccatgtttgaataatagtataat |
247 |
Q |
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| T |
29451324 |
aaaccaagccattccatgtttgaataatagtataat |
29451359 |
T |
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