View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8526_high_2 (Length: 481)
Name: NF8526_high_2
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 45177199 - 45177391
Alignment:
| Q |
50 |
ctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcgttgaagaagctaccgaaccatattat |
149 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45177199 |
ctaataacacttgctatgatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcgttgaagaagctaccgaaccatattat |
45177298 |
T |
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| Q |
150 |
cttgaagggcatgaaggcagaggattgttagatgcccttaatttacttttaattagtttgcttcagtcttttgtatatttttagggtaaaata |
242 |
Q |
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| T |
45177299 |
cttgaagggcatgaaggcagaggattgttagatgcccttaatttacttttaattagtttgcttcagtcttttgtatatttttagggtaaaata |
45177391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 35816706 - 35816894
Alignment:
| Q |
50 |
ctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcgttgaagaagctaccgaaccatattat |
149 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| | ||| ||| || |
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| T |
35816706 |
ctaattacactggctatggtgagattcatgatgttcatagcttagtagcatccagaggattgtcgggggattcattgaataagctactgcaccgtataat |
35816805 |
T |
|
| Q |
150 |
cttgaagggcatgaaggcagaggattgttagatgcccttaatttacttttaattagtttgcttcagtcttttgtatatttttagggtaa |
238 |
Q |
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| T |
35816806 |
cttgaaggacatgaaagcagaggattgttagatacccttaatttagttttaattagtttactttagttttttgtacatttatagagtaa |
35816894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 45568327 - 45568169
Alignment:
| Q |
50 |
ctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcgttgaagaagctaccgaaccatattat |
149 |
Q |
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||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||| || |
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| T |
45568327 |
ctaattacactggttacaatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcattgaataagctactgcaccatatgat |
45568228 |
T |
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| Q |
150 |
cttgaagggcatgaaggcagaggattgttagatgcccttaatttacttttaattagttt |
208 |
Q |
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|| ||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
45568227 |
ctagaaggacatgaagacagaggattgttagatacccttaatttagttttaattagttt |
45568169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 45093644 - 45093459
Alignment:
| Q |
50 |
ctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcgttgaagaagctaccgaaccatattat |
149 |
Q |
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| T |
45093644 |
ctaattacactggctatcatgtgattcatgatgttcatagcttagtagcatccagaggattgtcatgggattcatt---taagttaccgcaccatatgat |
45093548 |
T |
|
| Q |
150 |
cttgaagggcatgaaggcagaggattgttagatgcccttaatttacttttaattagtttgcttcagtcttttgtatatttttagggtaa |
238 |
Q |
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|||||||| || ||||||| ||||||||||||| ||||| ||||| ||||||||||||| ||| ||| ||||||| |||| ||| |||| |
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| T |
45093547 |
cttgaaggacacgaaggcaaaggattgttagatacccttcatttagttttaattagtttactttagttttttgtacatttatagagtaa |
45093459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 45102852 - 45102728
Alignment:
| Q |
50 |
ctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcgttgaagaagctaccgaaccatattat |
149 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||| ||||||||| ||||||| | |
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| T |
45102852 |
ctaataacactggctatgatgagtttcatgatgttcatagcttagtatcatccacaggattgtcgggggattcattgaataagctaccgcaccatatggt |
45102753 |
T |
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| Q |
150 |
cttgaagggcatgaaggcagaggat |
174 |
Q |
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|||||||||||||||||||||||| |
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| T |
45102752 |
tttgaagggcatgaaggcagaggat |
45102728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 45177424 - 45177480
Alignment:
| Q |
251 |
ttattactttacctcatctctatctaaaaagggatttcaaacacttttaactttaat |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45177424 |
ttattactttacctcatctctatctaaaaagggatttcaaacacttttaactttaat |
45177480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 45182280 - 45182325
Alignment:
| Q |
299 |
aactttaatgaaaagtgagaagttttacactttgttaatcaactct |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45182280 |
aactttaatgaaaagtgagaagttttacactttgttaatcaactct |
45182325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 44666603 - 44666546
Alignment:
| Q |
50 |
ctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagagg |
107 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
44666603 |
ctaataacacctgctatgatgagattcttgatgttcatagcttagtagcatctagagg |
44666546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 44685927 - 44685870
Alignment:
| Q |
50 |
ctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagagg |
107 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
44685927 |
ctaataacacctgctatgatgagattcttgatgttcatagcttagtagcatctagagg |
44685870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 45093391 - 45093344
Alignment:
| Q |
304 |
taatgaaaagtgagaagttttacactttgttaatcaactctttcattc |
351 |
Q |
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||||||||||||| |||||||| |||||||| |||||||||||||||| |
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| T |
45093391 |
taatgaaaagtgataagttttatactttgttcatcaactctttcattc |
45093344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 35817000 - 35817040
Alignment:
| Q |
309 |
aaaagtgagaagttttacactttgttaatcaactctttcat |
349 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| |
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| T |
35817000 |
aaaagtggtaagttttatactttgttaatcaactctttcat |
35817040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 9797269 - 9797217
Alignment:
| Q |
255 |
tactttacctcatctctatctaaaaagggatttcaaacacttttaactttaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9797269 |
tactttacctcatctctatctaaaaagggatttcaaacacttttaactttaat |
9797217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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