View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8526_high_4 (Length: 461)
Name: NF8526_high_4
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 515520 - 515963
Alignment:
| Q |
1 |
ttttctctcaacattaacaccataatcattgttttttcttttaatgttaatattacctagagtctcagtcccagtctctagaagctcgatcattacaaca |
100 |
Q |
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| T |
515520 |
ttttctctcaacattaacatcataatcattgtttttt--tttaatgttaatattacctagagtctcagtcccagtctctagaagctcgatcattacaaca |
515617 |
T |
|
| Q |
101 |
atttctcatattccatcatgcaaatgcgagagagattgacaatagaataataataagacatgtcaaacaaatggatatgtcaattgttatcattagcaac |
200 |
Q |
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| T |
515618 |
atttctcatattccatcatgcaaatgcgagagagattgacaataggataataataagacatgtcaaacaaatggatatgtcaattgttatcattagcaac |
515717 |
T |
|
| Q |
201 |
attgttgatttcatacaatgtgtatgtgtgtgaatgtcaagaacctgaggctctccctccgtcagctgaaaattgtaatggagttttcatttcgtatgat |
300 |
Q |
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| T |
515718 |
attgttgatttcatacaatgtctatgtgtgtgaatgtcaagaacctgaggctctccctccgtcagctgaaaattgtaatggagttttcatttcgtatgat |
515817 |
T |
|
| Q |
301 |
tttcttgatcggaggaagggatttcctcgggtcaagaatgtcacggcacaatcttggtcctttaatgcaaccgcaacagttctcaacacaggaaaagatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
515818 |
tttcttgatcggaggaagggatttcctcgggtcaagaatgtcacggcacaatcttggtcctttaatgcaaccgcaacagttctcaacacaggaaaagatg |
515917 |
T |
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| Q |
401 |
tacttaaagcatggaaattgttcataggatttcaacatcatgagat |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
515918 |
tacttaaagcatggaaattgttcataggatttcaacatcatgagat |
515963 |
T |
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