View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8526_high_5 (Length: 374)
Name: NF8526_high_5
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 41277422 - 41277761
Alignment:
| Q |
19 |
acaaggtatcgcatgatggtgaaaaggagcttggttcgcttggttgccaaagacttagcacgagagattaatccaaatgcagaagtattttcctcctcgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41277422 |
acaaggtatcgcatgatggtgaaaaggagcttggttcgcttggttgccaaagacttagcacgagagattaatccaaatgcagaagtattttcctcctcac |
41277521 |
T |
|
| Q |
119 |
taattaccattacaagaagcttcaatctcttcaacacattatttgttaatagcttgtagtttttgttcacctgcaataaacatgaaacaaaacttagact |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41277522 |
taattacctttacaagaagcttcaatctcttcaacacattatttgttaatagcttgtagtttttgttcacctggaataaacatgaaacaaaacttagact |
41277621 |
T |
|
| Q |
219 |
ctagag--nnnnnnnnnaaaatctctaaagaaatcttacatttagcctattaaaagaaacactaattcaatttctgtttttgatcttggacactaattaa |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41277622 |
ctagagttttttttttttaaatctctaaagaaatcttacatttagtctattaaaagcaacactaattcaatttctgtttttgatcttggacactaattaa |
41277721 |
T |
|
| Q |
317 |
aaattaaagatactattaaaataagttacacttatatatg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41277722 |
aaattaaagatactattaaaataagttacacttatatatg |
41277761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University