View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8526_low_1 (Length: 647)

Name: NF8526_low_1
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8526_low_1
NF8526_low_1
[»] scaffold0148 (1 HSPs)
scaffold0148 (15-629)||(27568-28188)
[»] scaffold0280 (1 HSPs)
scaffold0280 (544-626)||(2535-2617)


Alignment Details
Target: scaffold0148 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 15 - 629
Target Start/End: Complemental strand, 28188 - 27568
Alignment:
Q  15 gacatcagctttgaggtttataatttgttgaccaacttcagttttcttgtttataattcgtcaaacaaattcagttcacctgaaaaacggaacagatcag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28188 gacatcagctttgaggtttataatttgttgaccaacttcagttttcttgtttataattcgtcaaacaaattcagttcacctgaaaaacggaacagatcag 28089  T
Q  115 taattcgtaacgaacagtataacaataaaagattgttcctcaattcgacaggtgtgatacagtgggtggaagatgatttgccagttatatggaagcagcc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28088 taattcgtaacgaacagtataacaataaaagattgttcctcaattccacaggtgtgatacagtgggtggaagatgatttgctagttatatggaagcagcc 27989  T
Q  215 aagaagcaaatgtttaacatataatgcttgtggaaactttgctagctgtaatgacgatgatagcgtttgcaaatgtttaccaggattctacaatgataac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27988 aagaagcaaatgtttaacatataatgcttgtggaaactttgctagctgtaatgacgatgatagcgtttgcaaatgtttaccaggattctacaatgataac 27889  T
Q  315 cagggagaggaagattcttcacgacattgtacgaggagaaaaacaacattctgttctgaaaatgacatgaagttcttgaacttgaccatgattaaaacat 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||     
T  27888 cagggagaggaagattcttcacgacattgtacgaggagaaaaacaacattctgtactgaaaatgacacgaagttcttgaacttgaccatgattaaaacag 27789  T
Q  415 gaaagccagataaaaaggcaaccgtggaatctcaaataaaatgcgcagatttgtgccatgggatgtgtcca------cagtgccaggcttactcatatgc 508  Q
    ||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  27788 gaaggccagatataaaggtaaccgtggaatctcaaaaaaaatgcgcagatttgtgccatgggatgtgtccacagtcacagtgccaggcttactcatatgc 27689  T
Q  509 tcaggtccctgataagcagctgcgtggtcttattccttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggat 608  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27688 tcaagtccctgataagcagcagcgtggtcttattccttcaaactgttggatctggacacacagtttaactactcttaaagaagagtatactagttgggat 27589  T
Q  609 gatgatcgtagactcattatc 629  Q
    |||||||||||||||||||||    
T  27588 gatgatcgtagactcattatc 27568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 544 - 626
Target Start/End: Complemental strand, 2617 - 2535
Alignment:
Q  544 cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcatt 626  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  2617 cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcatt 2535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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