View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8526_low_11 (Length: 315)
Name: NF8526_low_11
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 26208404 - 26208104
Alignment:
| Q |
1 |
cacttctcctttgatgggtttgctctcacattctgtaagggtatctaccattgctttggcttgtggagagtcttgagataaagagaagattttgagaaga |
100 |
Q |
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| T |
26208404 |
cacttctcctttgatgggtttgctctcacattctgtaagggtatctaccattgctttggcttgtggagagtcttgagataaagagaagattttgagaaga |
26208305 |
T |
|
| Q |
101 |
gttggaagtttgttcaatgaaaaaggaagtgaatcagctttgtctcttggccaaaacttaggggaagttgaagggtctcttttgggaaaattaatttgca |
200 |
Q |
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| T |
26208304 |
gttggaagtttgttcaatgaaaaaggaagtgaatcagctttgtctcttggccaaaacttaggggaagttgaagggtttcttttgggaaaattaatttgca |
26208205 |
T |
|
| Q |
201 |
ttcttttcccaacttttaagtcttttaaggtgaagaacaccataacagaagggtccatgtgattgtgattatgtgcatgatgtttgtgttctgtttgatg |
300 |
Q |
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| T |
26208204 |
ttcttttcccaacttttaagtcttttaaggtgaagaacaccataacagaaggatccatgtgattgtgattatgtgcatgatgtttgtgttctgtttgatg |
26208105 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
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| T |
26208104 |
t |
26208104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 54449144 - 54449382
Alignment:
| Q |
5 |
tctcctttgatgggtttgctctcacattctgtaagggtatctaccattgctttggcttgtggagagtcttgagataaagagaagattttgagaagagttg |
104 |
Q |
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|||||||||||||||||||| ||||||||| | | ||| | |||||||| || |||| || || || |||| |||||||||| ||| |||||| || |
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| T |
54449144 |
tctcctttgatgggtttgctttcacattcttttaaggtgctttccattgctatgccttgaggtgaacctcgagagaaagagaagaattttagaagatatg |
54449243 |
T |
|
| Q |
105 |
gaagtttgttcaatgaaaaaggaagtgaatcagctttgtctcttggccaaaacttaggggaagttgaagggtctcttttgggaaaattaatttgcattct |
204 |
Q |
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| T |
54449244 |
agagttggtttgatgagaaaggaagtgattcagcttcttctttgggccataacttaggggaagttgatgggtctctcttaggaaaataaatttgcattat |
54449343 |
T |
|
| Q |
205 |
tttcccaacttttaagtcttttaaggtgaagaacaccat |
243 |
Q |
| |
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||| || ||||| || |||||||| |||||||| ||||| |
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| T |
54449344 |
ttttcctactttcaaatcttttaaagtgaagaataccat |
54449382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 49755130 - 49754892
Alignment:
| Q |
5 |
tctcctttgatgggtttgctctcacattctgtaagggtatctaccattgctttggcttgtggagagtcttgagataaagagaagattttgagaagagttg |
104 |
Q |
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||||||||||||||||| |||||||||||| | | || | | ||| || | ||||| || || |||||||| |||||||||| |||||||||| || |
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| T |
49755130 |
tctcctttgatgggtttactctcacattctcttaaagtgtttttcatggccattgcttgaggtgaatcttgagagaaagagaagaatttgagaagatatg |
49755031 |
T |
|
| Q |
105 |
gaagtttgttcaatgaaaaaggaagtgaatcagctttgtctcttggccaaaacttaggggaagttgaagggtctcttttgggaaaattaatttgcattct |
204 |
Q |
| |
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|||| ||| |||||||||||||||| |||||||| | | | | ||| ||||||||||||||||| |||||||| || ||||||| |||||||||| | |
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| T |
49755030 |
agagttggtttgatgaaaaaggaagtgattcagctttttgtttggaccataacttaggggaagttgatgggtctctcttaggaaaataaatttgcattat |
49754931 |
T |
|
| Q |
205 |
tttcccaacttttaagtcttttaaggtgaagaacaccat |
243 |
Q |
| |
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||||| ||||| || ||||| || |||||||| ||||| |
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| T |
49754930 |
gttccctactttcaaatctttcaaagtgaagaaaaccat |
49754892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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