View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8526_low_13 (Length: 279)
Name: NF8526_low_13
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 4033797 - 4033543
Alignment:
| Q |
18 |
agagctaacacaacaaactacaagaaagatcataatctagcaaatgtaaaccgtctcaatgactatcaaannnnnnn--ggtcaactattgcgcaagtaa |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4033797 |
agagctaacacaacaaactccaagaaagatcataatctagtaaatgtaaaccgtctcaatgactatcaaatttttttttggtcaactattgcgcaagtaa |
4033698 |
T |
|
| Q |
116 |
ctaatccctttatagtaattgaaattcatttaagaagttgatctttctaaagagattgaaatcttgataaaatgtttaacaaacctaaatatttaccgct |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4033697 |
ctaatcccttcatagtaattgaaattcatttaagaagttgatctttctaaagagattgaaatcttgataaaatggttaacaaacctaaatatttaccgct |
4033598 |
T |
|
| Q |
216 |
tatggcacatggaccaccaatatttatatgataataattataactcaagtataat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4033597 |
tatggcacatggaccaccaatatttatatgataataattataactcaagtataat |
4033543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University