View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8526_low_14 (Length: 277)
Name: NF8526_low_14
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 68 - 268
Target Start/End: Complemental strand, 40977565 - 40977365
Alignment:
| Q |
68 |
aataatgtctggttaagtgttgataatcatgactatagtgattggatcaaatcatcaaactgagatatgcttgttaatatataaagaatcaattatgcaa |
167 |
Q |
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| T |
40977565 |
aataatgtctggttaagtgttgataatcatgactatagtgattggatcaaatcatcaaactgagatatgcttgttaatatataaagaatcaattatgtaa |
40977466 |
T |
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| Q |
168 |
ataaataaaggtgcatgcatgcctacattttagttagaaacgtacaaatattacatagatccttttaatgatccaacctctcaattggttagcagaataa |
267 |
Q |
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| T |
40977465 |
ataaataaaggtgcatgcatgcctacattttagttagaaacgtacaaatattacatagatccttttaatgatccaacctctcaattggttagcaaaataa |
40977366 |
T |
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| Q |
268 |
t |
268 |
Q |
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| T |
40977365 |
t |
40977365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 40977651 - 40977599
Alignment:
| Q |
18 |
gaaaattatatggtatactacaaagttggaaaacaagatcagtatgtaacaat |
70 |
Q |
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| T |
40977651 |
gaaaattatatggtatactacaaagttggaaaacaagatcagtatgtaacaat |
40977599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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