View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8526_low_15 (Length: 261)

Name: NF8526_low_15
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8526_low_15
NF8526_low_15
[»] chr8 (2 HSPs)
chr8 (8-261)||(44688807-44689055)
chr8 (7-116)||(13170800-13170909)
[»] chr3 (12 HSPs)
chr3 (8-254)||(41985474-41985715)
chr3 (20-254)||(41980712-41980941)
chr3 (139-261)||(9425545-9425667)
chr3 (145-249)||(9407344-9407448)
chr3 (167-254)||(9343845-9343932)
chr3 (167-254)||(9448314-9448401)
chr3 (139-234)||(9494857-9494952)
chr3 (139-254)||(9617492-9617607)
chr3 (140-217)||(9329809-9329886)
chr3 (145-251)||(9397763-9397869)
chr3 (140-217)||(9336513-9336590)
chr3 (145-261)||(9416551-9416667)
[»] chr1 (3 HSPs)
chr1 (8-230)||(18991050-18991267)
chr1 (139-217)||(4439832-4439910)
chr1 (139-251)||(4428603-4428715)
[»] chr2 (2 HSPs)
chr2 (139-254)||(20694330-20694445)
chr2 (14-87)||(20694471-20694544)
[»] chr6 (3 HSPs)
chr6 (145-254)||(7046817-7046926)
chr6 (7-52)||(7025589-7025634)
chr6 (5-45)||(7041348-7041388)
[»] chr7 (1 HSPs)
chr7 (139-234)||(3695662-3695757)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 44689055 - 44688807
Alignment:
Q  8 ggagttggccagaacaagttggagtaatcaggataatcggacaaaggggaaagtctgtgttgatccaagtgaaaaacacacatcccacaaagcatatcgt 107  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  44689055 ggaggtggccagaacaagttggagtgatcaggataatcggacaaaggggaaactctgcgttgatccaagtgaaaaacacacatcccacaaagcatatcgt 44688956  T
Q  108 caaaatagttgaaggatttgattcacaagtgaagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattcccc 207  Q
    ||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44688955 caaaatagttgaaggatt-----cacaagtgaagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattcccc 44688861  T
Q  208 aagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44688860 aagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttc 44688807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 13170909 - 13170800
Alignment:
Q  7 tggagttggccagaacaagttggagtaatcaggataatcggacaaaggggaaagtctgtgttgatccaagtgaaaaacacacatcccacaaagcatatcg 106  Q
    ||||| |||||| ||||||||| |||| || ||| |||| || ||||||||||| | |  |||||||||||||||||||||||||||||||||||| |||    
T  13170909 tggaggtggccaaaacaagttgaagtactcgggacaatcagataaaggggaaagccggcattgatccaagtgaaaaacacacatcccacaaagcatctcg 13170810  T
Q  107 tcaaaatagt 116  Q
    |||| |||||    
T  13170809 tcaacatagt 13170800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 41985474 - 41985715
Alignment:
Q  8 ggagttggccagaacaagttggagtaatcaggataatcggacaaaggggaaagtctgtgttgatccaagtgaaaaacacacatcccacaaagcatatcgt 107  Q
    |||| |||||| ||| || ||||||| ||||||||||| |||||||||||||  |    |||||||||||||||||||||||||||||||||||| | ||    
T  41985474 ggaggtggccaaaacgaggtggagtactcaggataatcagacaaaggggaaacccaacattgatccaagtgaaaaacacacatcccacaaagcatctggt 41985573  T
Q  108 caaaatagttgaaggatttgattcacaagtgaagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattcccc 207  Q
    |||||| || |||     ||  |||  | | ||||| |||||||| |||||| ||| ||||||||||||||||| || |||||| ||| || ||||||||    
T  41985574 caaaatcgtagaa-----tgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattcccc 41985668  T
Q  208 aagaacaaaattctattccctaaactcgttaactttacccatttctt 254  Q
    |||||||||| ||||| |||||||||||  ||||| |||||||||||    
T  41985669 aagaacaaaactctatcccctaaactcgccaacttgacccatttctt 41985715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 41980712 - 41980941
Alignment:
Q  20 aacaagttggagtaatcaggataatcggacaaaggggaaagtctgtgttgatccaagtgaaaaacacacatcccacaaagcatatcgtcaaaatagttga 119  Q
    ||||||||| |||| |||||||||||||||||||||||||  |    ||||||||||||||||| |||||||||||| ||||| | || ||||  |  ||    
T  41980712 aacaagttgtagtattcaggataatcggacaaaggggaaacacgaccttgatccaagtgaaaaatacacatcccacatagcattttgttaaaagggagga 41980811  T
Q  120 aggatttgattcacaagtgaagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaatt 219  Q
    |     ||  |||| |   ||||| | |||||| |||||| ||| ||||||||  ||||||| || | |||| ||| || |||||||||||||||||| |    
T  41980812 a-----tgcatcaccaacaaagataatacaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaact 41980906  T
Q  220 ctattccctaaactcgttaactttacccatttctt 254  Q
    |||| |||||||||||| ||||| |||||||||||    
T  41980907 ctatcccctaaactcgtcaacttgacccatttctt 41980941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 9425545 - 9425667
Alignment:
Q  139 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 238  Q
    ||||| ||||||||||||||||||| | ||||||||||||| | || |||||||||| || ||||| | ||||||||||  ||||||| ||||||| | |    
T  9425545 aagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctattccttaaactcatca 9425644  T
Q  239 actttacccatttcttatgcttc 261  Q
    |||| |||||||| |||| ||||    
T  9425645 acttcacccattttttattcttc 9425667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 9407344 - 9407448
Alignment:
Q  145 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaacttta 244  Q
    ||||||||||||||||||| | ||||||||||||| | || |||||||||| || ||||| | ||||||||||  |||| |||||||||| | ||||| |    
T  9407344 acacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttca 9407443  T
Q  245 cccat 249  Q
    |||||    
T  9407444 cccat 9407448  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 9343845 - 9343932
Alignment:
Q  167 acaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttctt 254  Q
    ||||||||||||||| || |||||| ||| |||||||||||||||||||||  |||| ||||||| | |||||||| ||||| |||||    
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttctt 9343932  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 9448314 - 9448401
Alignment:
Q  167 acaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttctt 254  Q
    ||||||||||||||| || |||||| ||| | |||||||||||||||||||  |||| ||||||| | |||||||| |||||||||||    
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttctt 9448401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 9494952 - 9494857
Alignment:
Q  139 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactc 234  Q
    ||||| |||||||||||||||| ||   ||||||| ||||||| || |||||| ||| || ||||||||||||||||||  |||| ||||||||||    
T  9494952 aagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactc 9494857  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 9617607 - 9617492
Alignment:
Q  139 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 238  Q
    ||||| |||||||||||||||| || | ||||||| ||||||| || |||||||||| || ||||| | | ||||||||  |||| ||||||| |  | |    
T  9617607 aagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttca 9617508  T
Q  239 actttacccatttctt 254  Q
    |||| |||||||||||    
T  9617507 acttcacccatttctt 9617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 9329809 - 9329886
Alignment:
Q  140 agattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaa 217  Q
    |||| ||||||||||| ||||||| |  ||| || ||||||| || |||||| |||||| ||||||||||||||||||    
T  9329809 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaa 9329886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 9397763 - 9397869
Alignment:
Q  145 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaacttta 244  Q
    ||||||||||||||||||| | |||||||| |||| | ||  ||||||||| || ||||| | |||||||| |  |||| |||||||||| | ||||| |    
T  9397763 acacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatcccctaaactcatcaacttca 9397862  T
Q  245 cccattt 251  Q
    | |||||    
T  9397863 cgcattt 9397869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 9336513 - 9336590
Alignment:
Q  140 agattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaa 217  Q
    |||| ||||||||||| ||||||| |  ||| || ||||||| || |||||| ||| || ||||||||||||||||||    
T  9336513 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaa 9336590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 9416551 - 9416667
Alignment:
Q  145 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaacttta 244  Q
    |||||||||||||| | || | ||| |||| | || | || |||||||||| ||| |||| | |||||||| |  |||| |||||||||||| ||||| |    
T  9416551 acacaattccctttagtaacacacatatccaaggctgaagcagaaaatgaacatttattcacgaagaacaacaccctatcccctaaactcgtcaacttca 9416650  T
Q  245 cccatttcttatgcttc 261  Q
    ||||||| |||| ||||    
T  9416651 cccattttttattcttc 9416667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 18991050 - 18991267
Alignment:
Q  8 ggagttggccagaacaagttggagtaatcaggataatcggacaaaggggaaagtctgtgttgatccaagtgaaaaacacacatcccacaaagcatatcgt 107  Q
    |||| |||||||||||||||| |||| ||||||||||  |||||||| ||||| || ||||  ||||||| ||||||||||||||||||  |||| |  |    
T  18991050 ggaggtggccagaacaagttgaagtagtcaggataatgagacaaaggagaaagcctttgttcgtccaagtcaaaaacacacatcccacatcgcatgttat 18991149  T
Q  108 caaaatagttgaaggatttgattcacaagtgaagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattcccc 207  Q
    |||||  | |||| |  | |  ||   | | ||||  ||||||||||||||| ||| ||| ||||| ||||||| || |||||| ||| || ||||||||    
T  18991150 caaaagggatgaacgcatcg--tc---aataaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattcccc 18991244  T
Q  208 aagaacaaaattctattccctaa 230  Q
    ||||||||||  |||||||||||    
T  18991245 aagaacaaaaccctattccctaa 18991267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 4439832 - 4439910
Alignment:
Q  139 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaa 217  Q
    ||||| |||||||||||||| | || | ||||||||||||||| || |||||| ||| || |||||||||| |||||||    
T  4439832 aagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaa 4439910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 4428603 - 4428715
Alignment:
Q  139 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 238  Q
    ||||| |||||||||||||| | || |||||| || |||||||  | ||||||  || || |||||||||| |||||||  |||| ||| |||||||| |    
T  4428603 aagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatcccccaaactcgtca 4428702  T
Q  239 actttacccattt 251  Q
    | || ||||||||    
T  4428703 atttcacccattt 4428715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 20694445 - 20694330
Alignment:
Q  139 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 238  Q
    ||||| ||||||||||||||||||| | ||||||||||||||| || |||||| ||| || |||||||||| |||||||  |||| ||| ||||| || |    
T  20694445 aagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgtca 20694346  T
Q  239 actttacccatttctt 254  Q
    |  | |||||||||||    
T  20694345 aactcacccatttctt 20694330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 20694544 - 20694471
Alignment:
Q  14 ggccagaacaagttggagtaatcaggataatcggacaaaggggaaagtctgtgttgatccaagtgaaaaacaca 87  Q
    ||||||||||||||  | || |||||||||||||||||||| ||||| |  | ||||||||| || ||||||||    
T  20694544 ggccagaacaagttaaaatattcaggataatcggacaaaggtgaaagccgatcttgatccaaatggaaaacaca 20694471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 7046817 - 7046926
Alignment:
Q  145 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaacttta 244  Q
    ||||||||||||||||||| | ||||||| |||  || || |||||| ||| |||   ||||||||||||||| | ||| |||||||||||||||||| |    
T  7046817 acacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttca 7046916  T
Q  245 cccatttctt 254  Q
    |||| |||||    
T  7046917 cccacttctt 7046926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 7025589 - 7025634
Alignment:
Q  7 tggagttggccagaacaagttggagtaatcaggataatcggacaaa 52  Q
    ||||| |||||||||||||||||| || ||||||||||||||||||    
T  7025589 tggaggtggccagaacaagttggaatattcaggataatcggacaaa 7025634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 7041348 - 7041388
Alignment:
Q  5 tttggagttggccagaacaagttggagtaatcaggataatc 45  Q
    ||||||| |||||||||||||||||| || |||||||||||    
T  7041348 tttggaggtggccagaacaagttggaatattcaggataatc 7041388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 3695662 - 3695757
Alignment:
Q  139 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactc 234  Q
    ||||| ||||||||||||||||||  |||||||||||||||| ||| |||||||||| ||    | || |||||||||| ||||| ||||||||||    
T  3695662 aagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactc 3695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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