View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8526_low_2 (Length: 555)
Name: NF8526_low_2
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 61 - 538
Target Start/End: Complemental strand, 9462854 - 9462377
Alignment:
| Q |
61 |
tggattttcttttgctaagaagattattccccttgttaaggaaaatgcacgtccaatgaaagacatcaagaaagtaagttctactactaaatcatgcact |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462854 |
tggattttcttttgctaagaagattattccccttgttaaggaaaatgcacgtccaatgaaagacatcaagaaagtaagttctactactaaatcatgcact |
9462755 |
T |
|
| Q |
161 |
tcctaaatgctatatatgtagttaaagattatttcccttgttaaggaagctatgcaacattgacaccgaagacatatctattgtctgacacaacactcac |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
9462754 |
tcctaaatgctatatatgtagttaaagattatttcccttgttaaggaagctatgcaacattgacaccgaagacatgtctattgtctgacacgacactcac |
9462655 |
T |
|
| Q |
261 |
acgtgtaattacattcattaacttccatttttacaatggtgtcaatgtcgtgtctgtgtcagtgtttcatagtttgatcagtgatgagacttttgtagat |
360 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9462654 |
acgtgtaattacgttcattaacttccatttttacaatggtgtcaatgtcgtgtctgtgtcagtgtttcatagtttgattagtgatgagacttttgtagat |
9462555 |
T |
|
| Q |
361 |
atgatagtgttgaatgttgaatttgaactatgccattaattaattatttgcttgaaattaattggttaggtttaactgatttgtaatgttgtagctgatg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462554 |
atgatagtgttgaatgttgaatttgaactatgccattaattaattatttgcttgaaattaattggttaggtttaactgatttgtaatgttgtagctgatg |
9462455 |
T |
|
| Q |
461 |
aagaagatgctaaagaggaaaattcatccagatattgatctcaagaatcacaaagcagaagaaaacattattaataac |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462454 |
aagaagatgctaaagaggaaaattcatccagatattgatctcaagaatcacaaagcagaagaaaacattattaataac |
9462377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9462914 - 9462880
Alignment:
| Q |
1 |
ttattctgcagccaaagtcttggttgagtcaagtg |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462914 |
ttattctgcagccaaagtcttggttgagtcaagtg |
9462880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 10335771 - 10335804
Alignment:
| Q |
299 |
gtgtcaatgtcgtgtctgtgtcagtgtttcatag |
332 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
10335771 |
gtgtcactgtcgtgtctgtgtcagtgtttcatag |
10335804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 33523453 - 33523486
Alignment:
| Q |
299 |
gtgtcaatgtcgtgtctgtgtcagtgtttcatag |
332 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
33523453 |
gtgtcaatgtcgtgtctgtgtcagtgttttatag |
33523486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University