View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8526_low_23 (Length: 211)
Name: NF8526_low_23
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_low_23 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 26897445 - 26897314
Alignment:
| Q |
69 |
tttgtaatgctaagttgaagaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca |
168 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26897445 |
tttgtaatgctaagttgaagtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca |
26897346 |
T |
|
| Q |
169 |
cgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26897345 |
cgtttccactcaaaatcctgcaacagtataat |
26897314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 26901907 - 26901776
Alignment:
| Q |
69 |
tttgtaatgctaagttgaagaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca |
168 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26901907 |
tttgtaatgctaagttgaagtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca |
26901808 |
T |
|
| Q |
169 |
cgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26901807 |
cgtttccactcaaaatcctgcaacagtataat |
26901776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 27205859 - 27205727
Alignment:
| Q |
69 |
tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27205859 |
tttgtaatgctaagttgaacgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
27205760 |
T |
|
| Q |
168 |
acgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27205759 |
acgtttccactcaaaatcctgcaacagtataat |
27205727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 27210324 - 27210192
Alignment:
| Q |
69 |
tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
167 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27210324 |
tttgtaatgctaagttgaacgtaagtagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
27210225 |
T |
|
| Q |
168 |
acgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
27210224 |
acgtttccactcaaaatcctgcaatagtataat |
27210192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 24859179 - 24859292
Alignment:
| Q |
87 |
agaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcc |
186 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24859179 |
agaaagcagtatgcggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcc |
24859278 |
T |
|
| Q |
187 |
tgcaacagtataat |
200 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24859279 |
tgcaacagtataat |
24859292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 24047105 - 24047237
Alignment:
| Q |
69 |
tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24047105 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
24047204 |
T |
|
| Q |
168 |
acgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |
|
|
| T |
24047205 |
acgtttccgctcaagatcctgcaacagtataat |
24047237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 23674829 - 23674961
Alignment:
| Q |
69 |
tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23674829 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
23674928 |
T |
|
| Q |
168 |
acgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||| |
|
|
| T |
23674929 |
acgttttcgctcaagatcctgcaacagtataat |
23674961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 23679334 - 23679466
Alignment:
| Q |
69 |
tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23679334 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
23679433 |
T |
|
| Q |
168 |
acgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||| |
|
|
| T |
23679434 |
acgttttcgctcaagatcctgcaacagtataat |
23679466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 24051571 - 24051703
Alignment:
| Q |
69 |
tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24051571 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
24051670 |
T |
|
| Q |
168 |
acgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||| |
|
|
| T |
24051671 |
acgttttcgctcaagatcctgcaacagtataat |
24051703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 26406715 - 26406847
Alignment:
| Q |
69 |
tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26406715 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
26406814 |
T |
|
| Q |
168 |
acgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |
|
|
| T |
26406815 |
acgtttccgctcaagatcctgcaacagtataat |
26406847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 26411181 - 26411313
Alignment:
| Q |
69 |
tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26411181 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
26411280 |
T |
|
| Q |
168 |
acgtttccactcaaaatcctgcaacagtataat |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |
|
|
| T |
26411281 |
acgtttccgctcaagatcctgcaacagtataat |
26411313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 20486898 - 20486853
Alignment:
| Q |
19 |
atcaggtttgttgttcttcttattcttgtaggccattgctttgtca |
64 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||||| |||| |
|
|
| T |
20486898 |
atcaggtttgttgttcttattattattttaggccattgcttcgtca |
20486853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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