View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8526_low_3 (Length: 519)
Name: NF8526_low_3
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8526_low_3 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: scaffold1051 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 10 - 505
Target Start/End: Original strand, 2205 - 2696
Alignment:
| Q |
10 |
gatggacatcaacaggatttcattaatcacttcttgaggaagatgttcgctcttcttcgccattttgtggaggcacttatgcgtttgagttggactatct |
109 |
Q |
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| T |
2205 |
gatggacctcaacaggatttcattaatcacttcttgaggaagatgttcgctcttcttcgccattttgcggaggcacttatgcgtttgagttggactatct |
2304 |
T |
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| Q |
110 |
cacactttatttatacacaaaaaatctgttaagttgccttgctcacttgattattccttatttgctactatatgatgaactctttcccaatgcactttgt |
209 |
Q |
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| T |
2305 |
cacactttatttatacacaaaaaatctgttaagttgccttgctcacttgattattccttatttgctactatatgatgaactctttcccaatgcactttgt |
2404 |
T |
|
| Q |
210 |
aaaatgcattactccactcaaacaaagattgtgcaaaaagaatacttatacaagaataacataaaactaaccatgaccagaatacaagaattgcataaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2405 |
aaaatgcattactccactcaaacaaagattgtgcaaaaagaatacttatacaagaataacataaaactaaccatgaccagaatacaagaattgcataaaa |
2504 |
T |
|
| Q |
310 |
caagaatagcacaaccagaatcaaacaatgattgggcctcaaactaaccttcaatttcttgtttccttttcccctttttgtttaagtacaaaatttaaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2505 |
caagaatagcacaaccagaatcaaacaatgattgggccacaaactaaccttcaatttcttgtttccttttcccctttttgtttaagtacaaaatttaaca |
2604 |
T |
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| Q |
410 |
ctaactccattttactcactcatgacatcttcatacttctaaactctcattaattatctataggaatatcaaagagaactctcataatatgatgtc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
2605 |
ctaactccattttactcactcatgacatcttcatacttctaaactctc----attatctataggaatatcaaagaaaactctcataatatggtgtc |
2696 |
T |
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