View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8526_low_5 (Length: 470)

Name: NF8526_low_5
Description: NF8526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8526_low_5
NF8526_low_5
[»] chr3 (18 HSPs)
chr3 (19-459)||(6527052-6527501)
chr3 (19-459)||(6848633-6849082)
chr3 (273-383)||(6558582-6558691)
chr3 (208-320)||(6938784-6938892)
chr3 (247-319)||(6796826-6796898)
chr3 (354-432)||(6938661-6938742)
chr3 (335-436)||(6796932-6797033)
chr3 (257-343)||(6800093-6800178)
chr3 (327-432)||(6789191-6789299)
chr3 (157-210)||(6558494-6558547)
chr3 (36-107)||(6796556-6796636)
chr3 (72-111)||(6549823-6549862)
chr3 (69-105)||(6558384-6558420)
chr3 (265-299)||(8593966-8594000)
chr3 (208-257)||(6550000-6550049)
chr3 (339-380)||(7745471-7745512)
chr3 (345-393)||(8451720-8451767)
chr3 (338-374)||(8594045-8594081)
[»] scaffold0425 (1 HSPs)
scaffold0425 (19-459)||(11759-12187)
[»] chr1 (1 HSPs)
chr1 (345-383)||(7982062-7982100)


Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 6527052 - 6527501
Alignment:
Q  19 cttccatggtgtttggaacaaccaatgactcttacaatgattcttacaa---------tgcattttatatgctgccaaatgtaacacataaccattctgc 109  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| |         |||||||||||||||||||||||||||||| |||||||||||    
T  6527052 cttccatggtgtttggaacaaccaatgactcttccaatgatttttactaagactggactgcattttatatgctgccaaatgtaacacagaaccattctgc 6527151  T
Q  110 aatgcatcattccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatg 209  Q
    |||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527152 aatgcaccactccaaggaaattaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatg 6527251  T
Q  210 tgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527252 tgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaat 6527351  T
Q  310 aaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6527352 aaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctg 6527451  T
Q  410 tgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtct 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527452 tgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtct 6527501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 6848633 - 6849082
Alignment:
Q  19 cttccatggtgtttggaacaaccaatgactcttacaatgattcttacaa---------tgcattttatatgctgccaaatgtaacacataaccattctgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||||||| |||||||||||    
T  6848633 cttccatggtgtttggaacaaccaatgactcttacaatgattcttactaagactggactgcattttatatgctgccaaatgtaacacagaaccattctgc 6848732  T
Q  110 aatgcatcattccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatg 209  Q
    || ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  6848733 aacgcaccactccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacagagaatattattgttgagatg 6848832  T
Q  210 tgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaat 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6848833 tgatgtcaagactcaggcatccacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaat 6848932  T
Q  310 aaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6848933 aaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctg 6849032  T
Q  410 tgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtct 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6849033 tgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtct 6849082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 383
Target Start/End: Original strand, 6558582 - 6558691
Alignment:
Q  273 caccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaa 372  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  6558582 caccagaagttgacttgtcaatttagtgaaattcaataaaactctacttt-cattgctgtacttctgattgtaattcaatactttttctcagtttgtgaa 6558680  T
Q  373 taagtttatct 383  Q
    || ||||||||    
T  6558681 taggtttatct 6558691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 6938892 - 6938784
Alignment:
Q  208 tgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattca 307  Q
    |||||||||| |||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    |||||||    
T  6938892 tgtgatgtcaggactcaggcagctacttcaacttcttactctttgtatgtccttcgtagttcatacaccggaattcgacttgtcaattt----aaattca 6938797  T
Q  308 ataaaacactact 320  Q
    |||||||||||||    
T  6938796 ataaaacactact 6938784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 6796826 - 6796898
Alignment:
Q  247 tctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactac 319  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6796826 tctttgtatgttcttcctagttcatacaccggaagttgacgtgtcagtttagtgaaattcaataaaacactac 6796898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 432
Target Start/End: Complemental strand, 6938742 - 6938661
Alignment:
Q  354 ctttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgc---tcaaaaagccacaacagttc 432  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||   ||||||||||||||||||||    
T  6938742 ctttttctcagtttgtgaataagtttatctatctgcataattagaaggttctgctgtgctgatcaaaaagccacaacagttc 6938661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 436
Target Start/End: Original strand, 6796932 - 6797033
Alignment:
Q  335 ttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgctcaaaaagccacaacagttcgt 434  Q
    ||||| ||| || ||||| ||||||||||||||||||||||| |||||| ||||||| ||| |||||||||  |||||||||||||  | ||||||||||    
T  6796932 ttctggttggaaatcatttctttttctcagtttgtgaataagcttatctatctgcataattcgaaggttctgctgtgctcaaaaagaaataacagttcgt 6797031  T
Q  435 ta 436  Q
    ||    
T  6797032 ta 6797033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 6800093 - 6800178
Alignment:
Q  257 tccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattg 343  Q
    |||||||||||||||| || |||| |||||||| |||||||| |||||||||||||||||||  |||||||||| |||| |||||||    
T  6800093 tccttcctagttcatagactggaaattgacttgccaatttagggaaattcaataaaacacta-atttcattgcaatactactgattg 6800178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 6789191 - 6789299
Alignment:
Q  327 tgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgc---tcaaaaagcca 423  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||  ||||||| | |  |||| |||| ||||||  |||||   |||||||||||    
T  6789191 tgcagtacttctgattttaattcattaatttctctcagtttgtgaatatttttatctatttatatcactagagggttctgctgtgctgatcaaaaagcca 6789290  T
Q  424 caacagttc 432  Q
    |||||||||    
T  6789291 caacagttc 6789299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 6558494 - 6558547
Alignment:
Q  157 actccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgt 210  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||| |||||||    
T  6558494 actccaagtggaataaatatgtgtttcagacagagaatatcattgtagagatgt 6558547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 6796556 - 6796636
Alignment:
Q  36 acaaccaatgactcttacaatgattcttacaa---------tgcattttatatgctgccaaatgtaacacataaccattct 107  Q
    |||| ||||||||| |||||||||||||||||         |||||||||||||||||||||||||||||| |||||||||    
T  6796556 acaatcaatgactcatacaatgattcttacaaagataggactgcattttatatgctgccaaatgtaacacagaaccattct 6796636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 6549823 - 6549862
Alignment:
Q  72 ttttatatgctgccaaatgtaacacataaccattctgcaa 111  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  6549823 ttttatatgctgccaaatgtaacacagaaccattctgcaa 6549862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 6558384 - 6558420
Alignment:
Q  69 gcattttatatgctgccaaatgtaacacataaccatt 105  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6558384 gcattttatatgctgccaaatgtaacacagaaccatt 6558420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 299
Target Start/End: Original strand, 8593966 - 8594000
Alignment:
Q  265 agttcatacaccggaagttgacttgtcaatttagt 299  Q
    ||||||||||| |||||||||||||||||||||||    
T  8593966 agttcatacactggaagttgacttgtcaatttagt 8594000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 6550000 - 6550049
Alignment:
Q  208 tgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgt 257  Q
    |||||||||| |||||||||||| |||||||  ||| |||||||||||||    
T  6550000 tgtgatgtcaggactcaggcatccacttcaaagtctgactctttgtatgt 6550049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 7745512 - 7745471
Alignment:
Q  339 gattgtaattcattactttttctcagtttgtgaataagttta 380  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  7745512 gattgaaattcattactttttcacagtttgtgaataggttta 7745471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 8451767 - 8451720
Alignment:
Q  345 aattcattactttttctcagtttgtgaataagtttatctttctgcatca 393  Q
    |||||||||||||| ||||||||||||||| || ||||| |||||||||    
T  8451767 aattcattactttt-ctcagtttgtgaataggtctatctatctgcatca 8451720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 8594045 - 8594081
Alignment:
Q  338 tgattgtaattcattactttttctcagtttgtgaata 374  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  8594045 tgattgaaattcattattttttctcagtttgtgaata 8594081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 11759 - 12187
Alignment:
Q  19 cttccatggtgtttggaacaaccaatgactcttacaatgattcttacaa--------tgcattttatatgctgccaaatgtaacacataaccattctgca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |        |||| ||||||||||||||||||||||| |  |||||||||||    
T  11759 cttccatggtgtttggaacaaccaatgactcttacaatgattcttaccaagactgactgcactttatatgctgccaaatgtaacaga--accattctgca 11856  T
Q  111 atgcatcattccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgt 210  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  11857 atgcaccactccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacagagaatatcattgttgagatgt 11956  T
Q  211 gatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaata 310  Q
    |||||| ||||  ||           || |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11957 gatgtc-agacgaag-----------aatatc------tttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaata 12038  T
Q  311 aaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgt 410  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12039 aaacactactattcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgt 12138  T
Q  411 gctcaaaaagccacaacagttcgttaagcatatgttaactccattgtct 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12139 gctcaaaaagccacaacagttcgttaagcatatgttaactccattgtct 12187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 7982062 - 7982100
Alignment:
Q  345 aattcattactttttctcagtttgtgaataagtttatct 383  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7982062 aattcattactttttctcagtttgtgaatatgtttatct 7982100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University