View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8527_high_2 (Length: 391)

Name: NF8527_high_2
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8527_high_2
NF8527_high_2
[»] chr1 (8 HSPs)
chr1 (18-378)||(51762812-51763166)
chr1 (18-378)||(51854761-51855118)
chr1 (18-378)||(51858421-51858777)
chr1 (71-372)||(51756642-51756933)
chr1 (211-274)||(51782803-51782866)
chr1 (213-271)||(51407546-51407604)
chr1 (211-259)||(51832377-51832425)
chr1 (201-378)||(51381335-51381512)
[»] chr6 (4 HSPs)
chr6 (65-378)||(4182881-4183190)
chr6 (65-378)||(4743725-4744034)
chr6 (219-259)||(19119075-19119115)
chr6 (219-259)||(19126369-19126409)
[»] chr3 (3 HSPs)
chr3 (219-259)||(23197024-23197064)
chr3 (211-269)||(2492086-2492144)
chr3 (211-269)||(2631361-2631419)
[»] chr4 (1 HSPs)
chr4 (210-259)||(20016184-20016233)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 51763166 - 51762812
Alignment:
Q  18 acactgttaattggttgttatttagtgatcatggtttttggtgggttattgtttctcttgctttggagaatgagttgtatcaagagctttctcaccctca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51763166 acactgttaattggttgttatttagtgatcatggtttttggtgggttattgtttctcttggtttggagaatgagttgtatcaagagctttctcaccctca 51763067  T
Q  118 ttatgattaccaacctggaaatggcataattaccttgggggtgttgagggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttggat 217  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||       ||||||||| |||||||||||||||||||||    
T  51763066 ttatgattaccaacctggaaatggcataatta------gggtgttgagggattgtttgtgcatttttttctaatagtgacagcttttcttatttttggat 51762973  T
Q  218 catgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaaccaaggcattatatata 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51762972 catgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagatcgtggtttttattccttaaccaaggcattatatata 51762873  T
Q  318 tctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtct 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51762872 tctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtct 51762812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 51854761 - 51855118
Alignment:
Q  18 acactgttaattggttgttatttagtgatcatggtttttg-gtgggttattgtttctcttgctttggagaatgagttgtatcaagagctttctcaccctc 116  Q
    |||| |||||||||||| ||| |  ||||| | ||||||| | |||| ||||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  51854761 acacggttaattggttggtatatgatgatcctagtttttgagagggtcattgtttctcttgatttggagaatgggttgtatcaagagttttctcaccctc 51854860  T
Q  117 attatgattaccaacctggaaatggcataattaccttgggggtgttgagggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttgga 216  Q
     |||||| ||| |||||| |||| ||||   |||||||||||||||||||||||||||| |||       ||| |||||  |  |||||| || ||||||    
T  51854861 tttatgactacgaacctgcaaatcgcat---taccttgggggtgttgagggattgtttgtgcacttttt-ctagtagtgagaagttttctgatgtttgga 51854956  T
Q  217 tcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaaccaaggcattatatat 316  Q
    ||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||| ||||  ||||||| ||||  ||  |||||  ||||||||||    
T  51854957 tcatgaaagaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctataccaaaccattatatat 51855056  T
Q  317 atctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtct 378  Q
    ||||||||||||||||||||||| |||| || | ||||||||||| |||||||||| |||||    
T  51855057 atctgaagatgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtct 51855118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 51858421 - 51858777
Alignment:
Q  18 acactgttaattggttgttatttagtgatcatggtttttggtgggttattgtttctcttgctttggagaatgagttgtatcaagagctttctcaccctca 117  Q
    ||||||||||||||||| ||| |  ||||| | |||||  | |||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||     
T  51858421 acactgttaattggttggtatatcatgatcgtagttttgcgagggtcattgtttctcttgatttggagaatgagttgtgtcaagagctttttcaccctct 51858520  T
Q  118 ttatgattaccaacctggaaatggcataattaccttgggggtgttgagggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttggat 217  Q
    |||| ||||| ||||||||| | ||||   | ||||||||||| |||||||||| ||| |||       || |||||| ||  |||||| || |||||||    
T  51858521 ttataattacaaacctggaacttgcat---tgccttgggggtgctgagggattgcttgtgcatttttt-ctcatagtgacaagttttctgatgtttggat 51858616  T
Q  218 catgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaaccaaggcattatatata 317  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||| ||||  ||  ||||| | ||||||||||    
T  51858617 catgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcctcaaatgggaggttgtggttgttatatctataccaaagtattatatata 51858716  T
Q  318 tctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtct 378  Q
    |||||||||| || | ||||||| ||| || | ||||  ||||||||||| |||| |||||    
T  51858717 tctgaagatggcctaatgctgatatattttttcaagagagggaaatttaggttggctgtct 51858777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 71 - 372
Target Start/End: Complemental strand, 51756933 - 51756642
Alignment:
Q  71 tctcttgctttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttgagggatt 170  Q
    ||||||| ||||||||| ||||||| |||||||||||  ||||||| || |||| ||||||  | ||||  ||| ||   ||||||||||||||||||||    
T  51756933 tctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattat---cttgggggtgttgagggatt 51756837  T
Q  171 gtttgcgcannnnnnnctaatagtgccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctc 270  Q
    ||||| |||       || | |||| ||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51756836 gtttgtgcatttttt-ctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctc 51756738  T
Q  271 aaataggagattgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagttt 370  Q
    |||| |||||      |  ||||  ||  |||||  |||||||||| ||||| ||||||||||||||||||||| || |||||| ||| |||||||||||    
T  51756737 aaatgggaga------tcattatatctataccaaaccattatatatttctgaggatgaccaagtgctgatgtattttgtgaagaggggaaaatttagttt 51756644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 51782803 - 51782866
Alignment:
Q  211 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaat 274  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||    
T  51782803 tttggattatgaaggaatatggaaatgaacaatcttggaataaattattaagtgttcctaaaat 51782866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 51407604 - 51407546
Alignment:
Q  213 tggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctca 271  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  51407604 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 51407546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 51832377 - 51832425
Alignment:
Q  211 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 259  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  51832377 tttggataatgaaagaatatggaaatgaacaatcttggactaaattgtt 51832425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 51381512 - 51381335
Alignment:
Q  201 ttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaa 300  Q
    |||||| || ||||||| ||||| ||||||||||||| | | ||||||||||||||||| ||| ||||| | || | || | ||||||||  |  ||       
T  51381512 ttttctgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatggaaggtcgtggttttcttggctatt 51381413  T
Q  301 ccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtct 378  Q
     | || || ||||||| || ||||||||||||||  ||||| |  |||| |||||||||||||| |||||| ||||||    
T  51381412 gccagtcagtatatatttcggaagatgaccaagttttgatgcagtttctaaagatggggaaattcagtttgcttgtct 51381335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 65 - 378
Target Start/End: Complemental strand, 4183190 - 4182881
Alignment:
Q  65 attgtttctcttgctttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttga 164  Q
    ||||||||||||  |||| |||| ||||  |||||||||||||||||||||| |||||||  |||| ||| || || ||    |||||||||| ||||||    
T  4183190 attgtttctcttcatttgcagaaggagtcttatcaagagctttctcaccctctttatgatatccaatctgaaactgacaa---taccttggggatgttga 4183094  T
Q  165 gggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 264  Q
    ||||||||||| |||       ||||||||| ||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183093 gggattgtttgtgcatttttt-ctaatagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 4182995  T
Q  265 ttcctcaaataggagattgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatt 364  Q
    |||||||||| ||||||  |  | | |||  |||||| ||  |||||||||| |||||  |||||||||||||||||||| || |||||| | |||||||    
T  4182994 ttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatgaccaagtgctgatgtattttatgaagaggaggaaatt 4182895  T
Q  365 tagtttggttgtct 378  Q
    |||||||| |||||    
T  4182894 tagtttggctgtct 4182881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 65 - 378
Target Start/End: Complemental strand, 4744034 - 4743725
Alignment:
Q  65 attgtttctcttgctttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttga 164  Q
    ||||||||||||  |||| |||| ||||  ||||||||| |||||||||||| |||||||  |||| ||| || |  ||    |||||||||||||||||    
T  4744034 attgtttctcttcatttgcagaaggagtcttatcaagagttttctcaccctctttatgatatccaatctgaaacttacaa---taccttgggggtgttga 4743938  T
Q  165 gggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 264  Q
    ||||||||||| |||       ||||||||| ||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4743937 gggattgtttgtgcatttttt-ctaatagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 4743839  T
Q  265 ttcctcaaataggagattgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatt 364  Q
    |||||||||| ||||||  |  | | |||  |||||| ||  |||||||||| |||||  |||||||||||||||||||| || |||||| | |||||||    
T  4743838 ttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatgaccaagtgctgatgtattttatgaagaggaggaaatt 4743739  T
Q  365 tagtttggttgtct 378  Q
    |||||||| |||||    
T  4743738 tagtttggctgtct 4743725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 19119075 - 19119115
Alignment:
Q  219 atgaaggaatatggaaatggacaatcttggactaaattgtt 259  Q
    ||||||||||||||||||| | | |||||||||||||||||    
T  19119075 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19119115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 19126369 - 19126409
Alignment:
Q  219 atgaaggaatatggaaatggacaatcttggactaaattgtt 259  Q
    ||||||||||||||||||| | | |||||||||||||||||    
T  19126369 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19126409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 23197024 - 23197064
Alignment:
Q  219 atgaaggaatatggaaatggacaatcttggactaaattgtt 259  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  23197024 atgaaggaatatggaaatgaagaatcttggactaaattgtt 23197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 2492086 - 2492144
Alignment:
Q  211 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 269  Q
    ||||||| |||||||| ||||||||| || | ||||||||||||||||  |||||||||    
T  2492086 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 2492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 2631361 - 2631419
Alignment:
Q  211 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 269  Q
    ||||||| ||||||||||||||||||  | | ||||||||||||||||  |||||||||    
T  2631361 tttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcct 2631419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 20016233 - 20016184
Alignment:
Q  210 ttttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 259  Q
    ||||||||||||||||||||||||| |  | | |||||||||||||||||    
T  20016233 ttttggatcatgaaggaatatggaattcaagagtcttggactaaattgtt 20016184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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