View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8527_high_6 (Length: 342)
Name: NF8527_high_6
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8527_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 14532413 - 14532097
Alignment:
| Q |
10 |
gcagagatgttcccggcggttgctccttatccttcattccgaccgacttccattcgctactctaacgaccgacaggcgcttttcaaccgcattgctcctg |
109 |
Q |
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| T |
14532413 |
gcagagatgttcccggcggttgctccttatccttcataccgaccgacttccattcgctgctctaacgaccgacaggcgcttttcaaccgcattgctcctg |
14532314 |
T |
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| Q |
110 |
tctatgataacgtgcgcgcttcttttttctttatcttnnnnnnnnnnnnnnnnnnnagtcttctttctccttcacaccttttcattgttgcagctgaatg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14532313 |
tctatgataacgtgcgcgcttcttttttctttatctttctctctctctctctct--agtcttctttctccttcacaccttttcattgttgcagctgaatg |
14532216 |
T |
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| Q |
210 |
atttgctgagcttgggtcagcaccggatttggaagcgaatggctgtttcttggactgagtacgtattttgcttcttcacttaatcatttccttctattct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14532215 |
atttgctgagcttgggtcagcaccggatttggaagcgaatggctgtttcttggactgagtacgtattttgcttcttcacttaatcatttccttctattct |
14532116 |
T |
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| Q |
310 |
aatgaaattaattaatttg |
328 |
Q |
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||||||||||||||||||| |
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| T |
14532115 |
aatgaaattaattaatttg |
14532097 |
T |
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