View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8527_high_9 (Length: 254)
Name: NF8527_high_9
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8527_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 28923391 - 28923621
Alignment:
| Q |
17 |
catgtataatcat-tttttgtaagttgggaaatagaaagagtttgtgccgtttttaaatttcatgattcataacccatgttcacatgctagattgcaaga |
115 |
Q |
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| T |
28923391 |
catgtataatcatctttttgtacgttgggaaatagaaagagtttgtgccgtttttaaatttcatgattcatagcccatgttcacatgctagattgcaaga |
28923490 |
T |
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| Q |
116 |
aacttcactttgaattatattgagctctatatttacaatagaaaaagggattatattacacaacagaataaaatttatatgcgacatacatgctttgtga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| |
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| T |
28923491 |
aacttcactttgaattatattgagctctatatttacaatagaaaaagggattatattacacaacagaatgatatttatatgtgacatacatgctttgtga |
28923590 |
T |
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| Q |
216 |
tatcttcatgcagagttctggctttcttctc |
246 |
Q |
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| T |
28923591 |
tatcttcatgcagagttctggctttcttctc |
28923621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 28913985 - 28914213
Alignment:
| Q |
17 |
catgtataatcattttttg-taagttgggaaatagaaagag--tttgtgccgtttttaaatttcatgattcataacccatgttcacatgctagattgcaa |
113 |
Q |
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| T |
28913985 |
catgtataataatttttttctacgttgggaactagaaagagagtttttgccgtttttaaatttcatgattcatagcccatgttcacatgctagattgcaa |
28914084 |
T |
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| Q |
114 |
gaaacttcactttgaattatattgagctctatatttacaatagaaaaagggattatattacacaacagaataaaatttatatgcgacatacatgctttgt |
213 |
Q |
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| T |
28914085 |
gaaacttcaccttgaattatattgagctctatctttacaatagaaaaagggattatattacacaacagaataatattgatatgtgacatacatgctttgt |
28914184 |
T |
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| Q |
214 |
gatatcttcatgcagagttctggctttct |
242 |
Q |
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| T |
28914185 |
gatatcttcatgcagagttctggctttct |
28914213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 72 - 242
Target Start/End: Original strand, 28899684 - 28899855
Alignment:
| Q |
72 |
aatttcatgattcataacccatgttcacatgctagattgcaagaaacttcactttgaattatattgagctctatatttacaatagaaaa-agggattata |
170 |
Q |
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|||||||||||| ||| ||||| ||||||||||||||| || || | ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
28899684 |
aatttcatgattaatagcccatcttcacatgctagattccacgatatttccctttgaattatattgagctctatctttacaatagaaaaaagggattata |
28899783 |
T |
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| Q |
171 |
ttacacaacagaataaaatttatatgcgacatacatgctttgtgatatcttcatgcagagttctggctttct |
242 |
Q |
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| T |
28899784 |
ttacacaacacagtaatattgatatgcgacatacatgttttgtgatatcttcatgcagacttctggctttct |
28899855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 28932338 - 28932478
Alignment:
| Q |
103 |
ctagattgcaagaaacttcactttgaattatattgagctctatatttacaatagaaaaa-gggattatattacacaacagaataaaatttatatgcgaca |
201 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| ||| |||||||||| |
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| T |
28932338 |
ctagattcgaagaaatttcactttgaattatattgagctctatatttaaaatagaaaaaagggagtatattacacaacagaataatattaatatgcgaca |
28932437 |
T |
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| Q |
202 |
tacatgctttgtgatatcttcatgcagagttctggctttct |
242 |
Q |
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| T |
28932438 |
cacatgctttgtaatatcttcatgcagagttctagctttct |
28932478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 28889662 - 28889712
Alignment:
| Q |
192 |
atatgcgacatacatgctttgtgatatcttcatgcagagttctggctttct |
242 |
Q |
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|||| ||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
28889662 |
atatacgacatacatgctttatcatatcttcatgcagagttctggctttct |
28889712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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