View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8527_low_11 (Length: 270)
Name: NF8527_low_11
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8527_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 5688375 - 5688155
Alignment:
| Q |
21 |
tgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaa |
120 |
Q |
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| T |
5688375 |
tgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaa |
5688276 |
T |
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| Q |
121 |
gttttgagcattcattagcggtgcacataaaaaggaatgacaaaagttttctaaaataagcacaacatttctaatcaaggctgctcctcaaatctgtttt |
220 |
Q |
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|||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5688275 |
gttttgagcactcatcagctgtgcacataaaaaggaatgacaaaagttttctaaaataagcacaacatttctaatcaaggctgctcctcaaacctgtttt |
5688176 |
T |
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| Q |
221 |
gcatattaatatccccataaa |
241 |
Q |
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||||||||||||||||||||| |
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| T |
5688175 |
gcatattaatatccccataaa |
5688155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 5178626 - 5178768
Alignment:
| Q |
21 |
tgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |
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| T |
5178626 |
tgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaat--gtgtttgtgggttacattattgtaaaatcatggatgaaaaa |
5178723 |
T |
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| Q |
121 |
gttttgagcattcattagcggtgcacataaaaaggaatgacaaaa |
165 |
Q |
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| T |
5178724 |
gttttgagcattcattagcagtgcacataaaaaggcatgacaaaa |
5178768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 5280441 - 5280583
Alignment:
| Q |
21 |
tgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||| |
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| T |
5280441 |
tgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaat--gtgtttgtggtttacattattgtaaaatcatggatgaaaaa |
5280538 |
T |
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| Q |
121 |
gttttgagcattcattagcggtgcacataaaaaggaatgacaaaa |
165 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
5280539 |
gttttgagcattcattagcagtgcacataaaaaggcatgacaaaa |
5280583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 5125941 - 5125807
Alignment:
| Q |
21 |
tgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaa |
120 |
Q |
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|||||||||| |||||| | ||||| |||| |||||||||||||||| ||| |||||| ||| | |||||||| |||||||||| |||||||||||| |
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| T |
5125941 |
tgcctttggtttatttttattttgttatgcttaacaaattccattgtttcataacatatgtatttgttggttacatcattgtaaaatcatggatgaaaaa |
5125842 |
T |
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| Q |
121 |
gttttgagcattcattagcggtgcacataaaaagg |
155 |
Q |
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||||||| || |||||| | |||| |||||||||| |
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| T |
5125841 |
gttttgaacactcattaccagtgcccataaaaagg |
5125807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 5072453 - 5072410
Alignment:
| Q |
21 |
tgcctttggtgcatttttctgctgttaggctttacaaattccat |
64 |
Q |
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| T |
5072453 |
tgcctttggttcatttttcttctgttaggctttacaaattccat |
5072410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 22054073 - 22054171
Alignment:
| Q |
87 |
tgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaagttttctaaaataagcacaac |
186 |
Q |
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||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || ||||| ||||| ||| ||||||||||||||| ||||||||| |
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| T |
22054073 |
tgggttacattattgtaaaatcatggatgataaagttttgaacattcattagcagt--acatataaaggcatggtaaaagttttctaaaacaagcacaac |
22054170 |
T |
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