View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8527_low_13 (Length: 264)
Name: NF8527_low_13
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8527_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 18041597 - 18041798
Alignment:
| Q |
35 |
ggaccagtatgtgttttgtacttatttctgaaattcaacatttgtcccactcccacatcactgatagttgacaaagtgttcagcttgtttataatgcttg |
134 |
Q |
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| T |
18041597 |
ggaccagtatctgttttgtacttatttctgaaattcaacatttgtccc------acatcactgataattgacaaagtgttcagcttgtttataatgcttg |
18041690 |
T |
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| Q |
135 |
ttttactatgttatctgctttcgtacacttcattataaacacgtaaccaaacataatagggatgaagagcaaataattcagctccatcacaccgtctgtg |
234 |
Q |
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| T |
18041691 |
ttttactatgttatctgatttcgtacacttcattataaacacgcaaccaaacataatagggatgaagagcaaataattcagctccatctcagcgtctgtg |
18041790 |
T |
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| Q |
235 |
actctgtg |
242 |
Q |
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|||||||| |
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| T |
18041791 |
actctgtg |
18041798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 7054894 - 7055069
Alignment:
| Q |
37 |
accagtatgtgttttgtacttatttctgaaattcaacatttgtcccactcccacatcactgatagttgacaaagtgttcagcttgtttataatgcttgtt |
136 |
Q |
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| T |
7054894 |
accagtgtctgttttgtacttatttctggagttcaacatgtatcccac------attatcgataattgacaaagtgtttagcttgtttataatgcttgtt |
7054987 |
T |
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| Q |
137 |
ttactatgttatctgctttcgtacacttcattataaacacgtaaccaaacataatagggatgaagagcaaataattcagctccat |
221 |
Q |
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| T |
7054988 |
taaatgtgttatctgctttcatacact---ttataaacacgcaaccaaacataataaggatgaagagaaaataattcagctccat |
7055069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 7009045 - 7009164
Alignment:
| Q |
97 |
gatagttgacaaagtgttcagcttgtttataatgcttgttttactatgttatctgctttcgtacacttcattataaacacgtaaccaaacataataggga |
196 |
Q |
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| T |
7009045 |
gataattgacaaagtgtttagcttgtttataatgcttgtttaaatgtgttatctgctttcatacact---ttataaacacgcaaccaaacataatacgga |
7009141 |
T |
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| Q |
197 |
tgaagagcaaataattcagctcc |
219 |
Q |
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| T |
7009142 |
tgaagagaaaataattcagctcc |
7009164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 7024403 - 7024522
Alignment:
| Q |
97 |
gatagttgacaaagtgttcagcttgtttataatgcttgttttactatgttatctgctttcgtacacttcattataaacacgtaaccaaacataataggga |
196 |
Q |
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| T |
7024403 |
gataattgacaaagtgtttagcttgtttataatgcttgtttaaatgtgttatctgctttcatacact---ttataaacacgcaaccaaacataatacgga |
7024499 |
T |
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| Q |
197 |
tgaagagcaaataattcagctcc |
219 |
Q |
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| T |
7024500 |
tgaagagaaaataattcagctcc |
7024522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 6994121 - 6994173
Alignment:
| Q |
167 |
ttataaacacgtaaccaaacataatagggatgaagagcaaataattcagctcc |
219 |
Q |
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| T |
6994121 |
ttataaacacgcaaccaaacataatagggaggaatagaaaataattcagctcc |
6994173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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