View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8527_low_15 (Length: 252)
Name: NF8527_low_15
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8527_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 11759174 - 11759409
Alignment:
| Q |
12 |
agtgttgcatgtgagagagcacgcttgaagagtgtgatgagat------tgttggagaatcagttagtacttaggagcttccacttgtcttgtgagacac |
105 |
Q |
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| T |
11759174 |
agtgttgcatgtgagagagcacgcttgaagagtgtgatgagataaagattgttggagaatcagttagtacttagtagcttccacttgtcttgtgagacac |
11759273 |
T |
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| Q |
106 |
gcttttgaaggttagaaaataagaacatgaacgagagtgagaaatgtgatcaatcaaatatttataaaatgtgaaataaaatgaagtgtgtgggttaaat |
205 |
Q |
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| T |
11759274 |
gcttttgaaggttagaaaataagaacaagaacgagagtgagaaatgtgatcaatcaaatatttatcaaatgtgaaataaaatgaagtgtgtgggttaaat |
11759373 |
T |
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| Q |
206 |
tcacattatagtacatggaatatgtgcacttttctt |
241 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
11759374 |
tcacattttagtacatggaatatgtgcacttttctt |
11759409 |
T |
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