View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8527_low_18 (Length: 222)
Name: NF8527_low_18
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8527_low_18 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 14041 - 13838
Alignment:
| Q |
1 |
caactccccttttccatgctaaatcccaccatggtagctcgttttggaggtaaacattttcttgcccgataattgatgttcatgtgaaagctgtgtaccg |
100 |
Q |
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| T |
14041 |
caactcccctttcccatgctaaatcccaccatggtaactcgttttggaggtaaacattttcttgcccgataaatgatgttcatgtgaaagctgtgtaccg |
13942 |
T |
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| Q |
101 |
tggagattcaatgtttggggtctcctaagaatgcacatttgaattcttttataggtaccattcagatttaaagttccacaaacttacaaaaatctagcaa |
200 |
Q |
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| T |
13941 |
tggagattcaatgtttggcgtctcctaagaatgcacatttgaattcttttataggtaccattcagatttaaagttcaacaaacttacaaaaatctagcaa |
13842 |
T |
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| Q |
201 |
catt |
204 |
Q |
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|||| |
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| T |
13841 |
catt |
13838 |
T |
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Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 17015815 - 17015898
Alignment:
| Q |
121 |
tctcctaagaatgcacatttgaattcttttataggtaccattcagatttaaagttccacaaacttacaaaaatctagcaacatt |
204 |
Q |
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| T |
17015815 |
tctcctaagaaggcacatttgaattcttttataggtaccattcagattaaaagttcaacaaacttacaaaaatctagcaacatt |
17015898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 17546252 - 17546335
Alignment:
| Q |
121 |
tctcctaagaatgcacatttgaattcttttataggtaccattcagatttaaagttccacaaacttacaaaaatctagcaacatt |
204 |
Q |
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| T |
17546252 |
tctcctaagaaggcacatttgaattcttttataggtaccattcagattaaaagttcaacaaacttacaaaaatctagcaacatt |
17546335 |
T |
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