View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8527_low_3 (Length: 413)

Name: NF8527_low_3
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8527_low_3
NF8527_low_3
[»] chr3 (4 HSPs)
chr3 (41-123)||(28537939-28538021)
chr3 (225-366)||(28538122-28538263)
chr3 (342-380)||(4638172-4638210)
chr3 (322-374)||(7648764-7648816)
[»] chr5 (4 HSPs)
chr5 (309-374)||(7616945-7617010)
chr5 (325-391)||(35638066-35638132)
chr5 (324-399)||(39728387-39728462)
chr5 (291-399)||(21149734-21149842)
[»] scaffold0045 (1 HSPs)
scaffold0045 (323-399)||(58064-58140)
[»] chr6 (3 HSPs)
chr6 (327-376)||(11142629-11142678)
chr6 (325-376)||(8888908-8888959)
chr6 (311-380)||(14107377-14107446)
[»] chr4 (1 HSPs)
chr4 (287-374)||(37369037-37369124)
[»] chr1 (1 HSPs)
chr1 (337-380)||(10507717-10507760)
[»] chr8 (3 HSPs)
chr8 (322-375)||(18091427-18091480)
chr8 (322-374)||(583840-583892)
chr8 (322-366)||(33401829-33401873)
[»] chr2 (2 HSPs)
chr2 (291-380)||(26805314-26805403)
chr2 (322-390)||(41187717-41187785)
[»] scaffold0209 (1 HSPs)
scaffold0209 (322-374)||(12600-12652)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 28537939 - 28538021
Alignment:
Q  41 tagaaactttatgtgaaatggttaagaacagagaaaatcaacactgacccagtaatgtaatgagggtgaaaatcacatatatc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28537939 tagaaactttatgtgaaatggttaagaacagagaaaatcaacactgacccagtaatgtaatgagggtgaaaatcacatatatc 28538021  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 366
Target Start/End: Original strand, 28538122 - 28538263
Alignment:
Q  225 tggggggttaacggtgacggagtttatttttgtgccgttagtttatagnnnnnnnnnnnnngttgacttttgcatcggttttcaatccactaataacggg 324  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||              ||  |||||||| |||||||||||||||||||||||||    
T  28538122 tggggggttaacggtgacggagtttttttttgtgccgttagtttatagtttttttttttttcttttcttttgcaccggttttcaatccactaataacggg 28538221  T
Q  325 cgactaatttgactcaagcgtagaggtatgcacactggtcaa 366  Q
    ||||||||| |||||| ||||||||  ||||||||| |||||    
T  28538222 cgactaattcgactcatgcgtagagacatgcacactagtcaa 28538263  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 4638210 - 4638172
Alignment:
Q  342 gcgtagaggtatgcacactggtcaaacgttgtttctcct 380  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  4638210 gcgtagaggtatgcgcactggtcaagcgttgtttctcct 4638172  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 7648816 - 7648764
Alignment:
Q  322 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 374  Q
    |||||||||||  | |||  |||||||||||||| ||||||||||||||||||    
T  7648816 gggcgactaatccggctcgtgcgtagaggtatgcgcactggtcaaacgttgtt 7648764  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 7617010 - 7616945
Alignment:
Q  309 atccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 374  Q
    |||||| ||||| || |||||||| ||||||| ||||||||| ||||| |||||||||||||||||    
T  7617010 atccaccaataatggacgactaatctgactcatgcgtagaggcatgcatactggtcaaacgttgtt 7616945  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 35638066 - 35638132
Alignment:
Q  325 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaat 391  Q
    |||||||| ||||||  ||||||||||||||||||||  ||||||||||| ||||| | ||||||||    
T  35638066 cgactaatctgactcgtgcgtagaggtatgcacactgaccaaacgttgttcctcctgaaaatcgaat 35638132  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 39728462 - 39728387
Alignment:
Q  324 gcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaatctagtatt 399  Q
    |||||||||| ||||| |||||||||| ||||||||||| |||  ||||||||  || ||||||||| || |||||    
T  39728462 gcgactaattcgactcgagcgtagaggcatgcacactggccaagtgttgtttcctctgataatcgaacctggtatt 39728387  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 21149842 - 21149734
Alignment:
Q  291 cttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 390  Q
    |||| |||||||||||| |||||| |||   |||||||||||   ||||  ||||||||  |||| |||||||||||||||||| | ||| | |||||||    
T  21149842 ctttcgcatcggttttctatccaccaatggtgggcgactaatccaactcgtgcgtagagtcatgcgcactggtcaaacgttgttccccctgaaaatcgaa 21149743  T
Q  391 tctagtatt 399  Q
     || |||||    
T  21149742 cctggtatt 21149734  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 58064 - 58140
Alignment:
Q  323 ggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaatctagtatt 399  Q
    ||||||||||   ||||| |||||||||||| ||||||||||||||||||||||| ||   |||| |||||||||||    
T  58064 ggcgactaatccaactcatgcgtagaggtatacacactggtcaaacgttgtttcttctaggaatcaaatctagtatt 58140  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 11142678 - 11142629
Alignment:
Q  327 actaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 376  Q
    |||||| ||||||| ||||||||| |||| ||||||||||||||||||||    
T  11142678 actaatctgactcatgcgtagaggcatgcgcactggtcaaacgttgtttc 11142629  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 8888959 - 8888908
Alignment:
Q  325 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 376  Q
    ||||||||  |||||| |||||||||||||| |||||| |||||||||||||    
T  8888959 cgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttc 8888908  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 14107377 - 14107446
Alignment:
Q  311 ccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 380  Q
    |||||||||| |||||||||||  | |||| ||||||||| |||  |||||||||| ||||||| |||||    
T  14107377 ccactaataatgggcgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgttcctcct 14107446  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 374
Target Start/End: Original strand, 37369037 - 37369124
Alignment:
Q  287 ttgacttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 374  Q
    |||||||| |||||||||| | || ||| ||||  |||||||| ||  |||||  ||||||||| ||||||||||| |||||||||||    
T  37369037 ttgactttcgcatcggtttccgattcaccaatagtgggcgacttatccgactcgtgcgtagaggcatgcacactggacaaacgttgtt 37369124  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 10507760 - 10507717
Alignment:
Q  337 ctcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 380  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||    
T  10507760 ctcatgcgtagaggtatgcacactggccaaacgttgttcctcct 10507717  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 18091480 - 18091427
Alignment:
Q  322 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgttt 375  Q
    |||||||||||| | |||  ||||||||| |||| |||||||||||||||||||    
T  18091480 gggcgactaattcgcctcgtgcgtagaggcatgcgcactggtcaaacgttgttt 18091427  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 583892 - 583840
Alignment:
Q  322 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 374  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  583892 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 583840  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 33401829 - 33401873
Alignment:
Q  322 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaa 366  Q
    |||||||||||  |||||| ||||||||| |||||||||||||||    
T  33401829 gggcgactaatccgactcatgcgtagaggcatgcacactggtcaa 33401873  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 380
Target Start/End: Complemental strand, 26805403 - 26805314
Alignment:
Q  291 cttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 380  Q
    ||||||||||||||||| | |||| ||    |||||||||||  |||||| ||||||||| |||  |||||| ||||||| |||||||||    
T  26805403 cttttgcatcggttttcgagccaccaaaggtgggcgactaatccgactcatgcgtagaggcatgtgcactggccaaacgtcgtttctcct 26805314  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 41187785 - 41187717
Alignment:
Q  322 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 390  Q
    ||||||||||| || |||| ||||||||| ||| |||||||||||  |||||| | ||| |||||||||    
T  41187785 gggcgactaatatgtctcatgcgtagaggcatggacactggtcaagtgttgttccccctcataatcgaa 41187717  T

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Target: scaffold0209 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 12652 - 12600
Alignment:
Q  322 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 374  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  12652 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 12600  T

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