View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8527_low_6 (Length: 369)
Name: NF8527_low_6
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8527_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 356
Target Start/End: Complemental strand, 38443142 - 38442810
Alignment:
| Q |
21 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggaccttctgnnnnnnnaactatgtgaattgtgagatattcaaatttatatgtattt |
120 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38443142 |
gagaatgaaaagagggttcgagaaaagacggatgaaactgttgggaccttctctttttttaactatgtgaattgtgagatattcaaatttatatgtattt |
38443043 |
T |
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| Q |
121 |
tcattaactgaatttccaaaatattaggggggaatgaaagagagttttaaataaataaactatggcaaatatagtttgactaaccgaattttccaaatac |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
38443042 |
-cattaactgaatttccaaaatattaggggggaatgaaagagagttttaaataaataaactatggc-aatatagttggacttaccgaattttccaaatac |
38442945 |
T |
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| Q |
221 |
tatgggaatgtgaaaattcttatccatgttgtttgttaacttttcacgtgaannnnnnnngataagccatgtaacttatcccatgccatttatataaggc |
320 |
Q |
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| T |
38442944 |
tatgggaatgtgaaaattcttat-catgttgtttgttaacttttcacgtgaattttttttgataagccatttaacttatcccatcccatttatataaggc |
38442846 |
T |
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| Q |
321 |
atataacttatcacaattatattgtcaagtatattg |
356 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38442845 |
atataacttatcacaattatattgtcaagtatattg |
38442810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 38183043 - 38183083
Alignment:
| Q |
21 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
61 |
Q |
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| T |
38183043 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38183083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 38188088 - 38188048
Alignment:
| Q |
21 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
38188088 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38188048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 38210269 - 38210309
Alignment:
| Q |
21 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
38210269 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38210309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 38169557 - 38169517
Alignment:
| Q |
21 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
61 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38169557 |
gagagtgtaaagagggttcgagaaaagacgggtgaaactgt |
38169517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 38197547 - 38197587
Alignment:
| Q |
21 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
61 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38197547 |
gagagtgtaaagagggttcgagaaaagacgggtgaaactgt |
38197587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 38215314 - 38215274
Alignment:
| Q |
21 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
61 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38215314 |
gagagtgaaaagagggttcaagaaaagacgggtgaaactgt |
38215274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 38183237 - 38183191
Alignment:
| Q |
21 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
67 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
38183237 |
gagagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac |
38183191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 38215120 - 38215166
Alignment:
| Q |
21 |
gagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
67 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
38215120 |
gagagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac |
38215166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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