View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8527_low_7 (Length: 366)

Name: NF8527_low_7
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8527_low_7
NF8527_low_7
[»] chr5 (3 HSPs)
chr5 (1-186)||(14085599-14085784)
chr5 (204-366)||(14085769-14085935)
chr5 (176-250)||(14085682-14085756)
[»] chr6 (3 HSPs)
chr6 (143-219)||(12189602-12189678)
chr6 (1-89)||(12189684-12189772)
chr6 (84-129)||(12189600-12189645)
[»] chr1 (4 HSPs)
chr1 (84-216)||(15978457-15978588)
chr1 (84-234)||(22898595-22898744)
chr1 (170-234)||(15978451-15978514)
chr1 (84-200)||(22898504-22898619)
[»] chr8 (2 HSPs)
chr8 (90-234)||(16307665-16307808)
chr8 (84-200)||(16307477-16307592)
[»] chr7 (1 HSPs)
chr7 (92-139)||(19975052-19975099)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 14085599 - 14085784
Alignment:
Q  1 ataaataacagaccattagaataagaaagacacaaagacacaatgaactcaaaggaagaagcataagaatcaacaaaatatggataaactcaacaaagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14085599 ataaataacagaccattagaataagaaagacacaaagacacaatgaactcaaaggaagaagcataagaatcaacaaaatatggataaactcaacaaagta 14085698  T
Q  101 tgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactcaac 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14085699 tgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaacacaac 14085784  T

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Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 204 - 366
Target Start/End: Original strand, 14085769 - 14085935
Alignment:
Q  204 catgcataaactcaaccaacataagcatcaataagtcagaagctatagaatttaataaaatgaaaatcactaaactgaagctatacattaataatctttg 303  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14085769 catgcataaacacaaccaacataagcatcaataagtcagaagctatagaatttaataaaatgaaaatcactaaactgaagctatacattaataatctttg 14085868  T
Q  304 tcatacatatacaaag--aagaa--gaaaaaacaagtaacaaaactgaagctaatattaaatcaact 366  Q
    ||||||||||||||||  |||||   |||||| ||||||||||||||||||||||||||||||||||    
T  14085869 tcatacatatacaaagaaaagaaagaaaaaaaaaagtaacaaaactgaagctaatattaaatcaact 14085935  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 14085682 - 14085756
Alignment:
Q  176 ataaactcaacaaaatatgcataaaaaacatgcataaactcaaccaacataagcatcaataagtcagaagctata 250  Q
    |||||||||||||| ||||||| ||| ||||| ||||||||||| | |||||||||  | |||||||||||||||    
T  14085682 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctata 14085756  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 12189678 - 12189602
Alignment:
Q  143 caagtcagaagctatatacattaatattcatgcataaactcaacaaaatatgcataaaaaacatgcataaactcaac 219  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||| ||||  |||||||||||    
T  12189678 caagtcagaagctatagacattaataatcatgcataaactcaacaaaatatacatcaaagacatagataaactcaac 12189602  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12189772 - 12189684
Alignment:
Q  1 ataaataacagaccattagaataagaaagacacaaagacacaatgaactcaaaggaagaagcataagaatcaacaaaatatggataaac 89  Q
    ||||| |||| |||||||| |||||||||| ||||||| | ||||||||| |||||||||| ||||||||||||||| |||| ||||||    
T  12189772 ataaacaacaaaccattaggataagaaagaaacaaagaaaaaatgaactccaaggaagaagtataagaatcaacaaagtatgcataaac 12189684  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 12189645 - 12189600
Alignment:
Q  84 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaa 129  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||    
T  12189645 ataaactcaacaaaatatacatcaaagacatagataaactcaacaa 12189600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 15978457 - 15978588
Alignment:
Q  84 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactc 183  Q
    |||||||||||||| | |||  |||| |||| |||||||||||||| ||| |||||  |||| |||  ||||||||||||||| | |  |||| ||||||    
T  15978457 ataaactcaacaaaatgtgcc-caaaaacatagataaactcaacaaacatgagcatcaacaactcatcagctatatacattaaaaattgtgcaaaaactc 15978555  T
Q  184 aacaaaatatgcataaaaaacatgcataaactc 216  Q
    || |||||||| || ||| ||||| ||||||||    
T  15978556 aataaaatatgtatcaaagacatggataaactc 15978588  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 22898595 - 22898744
Alignment:
Q  84 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactc 183  Q
    ||||| |||||||||| ||||| ||||||||||||||| ||| ||| ||| |||||  || | |||| ||| |||  |||||| | ||||||||||| |     
T  22898595 ataaattcaacaaagtgtgcat-aaagacatggataaaatcagcaaacatgagcataaacgactcagcagccataggcattaaaaatcatgcataaattt 22898693  T
Q  184 aacaaaatatgcataaaaaacatgcataaactcaaccaacataagcatcaa 234  Q
    |||||| | ||||| |||  |||| ||||||||||| | ||| ||||||||    
T  22898694 aacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcatcaa 22898744  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 15978451 - 15978514
Alignment:
Q  170 tcatgcataaactcaacaaaatatgcataaaaaacatgcataaactcaaccaacataagcatcaa 234  Q
    |||||||||||||||||||||| |||   ||||||||  ||||||||||| ||||| ||||||||    
T  15978451 tcatgcataaactcaacaaaatgtgc-ccaaaaacatagataaactcaacaaacatgagcatcaa 15978514  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 22898504 - 22898619
Alignment:
Q  84 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactc 183  Q
    ||||| |||||||||| ||||| ||||||||||| ||| ||| ||| ||| |||||  | || |||| ||| |||  |||||| | ||||||||||| ||    
T  22898504 ataaattcaacaaagtgtgcat-aaagacatggaaaaaatcagcaaacatgagcataaaaaactcagcagccatagccattaaaagtcatgcataaattc 22898602  T
Q  184 aacaaaatatgcataaa 200  Q
    |||||| | ||||||||    
T  22898603 aacaaagtgtgcataaa 22898619  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 16307665 - 16307808
Alignment:
Q  90 tcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactcaacaaa 189  Q
    |||||||||| ||||| |||||||| |||||| ||| ||| ||| |||||  |||| |||| ||| |||  |||||| | ||||||||||| | ||||||    
T  16307665 tcaacaaagtgtgcat-aaagacatagataaaatcagcaaacatgagcataaacaactcagcagccataggcattaaaaatcatgcataaatttaacaaa 16307763  T
Q  190 atatgcataaaaaacatgcataaactcaaccaacataagcatcaa 234  Q
     | ||||| |||  |||| ||||||||||| | ||| ||||||||    
T  16307764 gtgtgcatcaaagccatgaataaactcaacaagcattagcatcaa 16307808  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 16307477 - 16307592
Alignment:
Q  84 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactc 183  Q
    ||||| |||||||||| ||||| ||||||||||| ||| ||| |||  || |||||  | || |||| |||||||  |||||| | ||||||||||| ||    
T  16307477 ataaattcaacaaagtgtgcat-aaagacatggaaaaaatcagcaaatatgagcatacaaaactcagcagctatagccattaaaagtcatgcataaattc 16307575  T
Q  184 aacaaaatatgcataaa 200  Q
    |||||| | ||||||||    
T  16307576 aacaaagtgtgcataaa 16307592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 19975052 - 19975099
Alignment:
Q  92 aacaaagtatgcatcaaagacatggataaactcaacaagcataagcat 139  Q
    |||||||| |||||||||| |||| ||||||||||||||||| |||||    
T  19975052 aacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcat 19975099  T

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