View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8527_low_8 (Length: 353)
Name: NF8527_low_8
Description: NF8527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8527_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 11759501 - 11759840
Alignment:
| Q |
1 |
ttaaaaattgtaccagctttaaataaaatatctataagattatagaaattattatagtattaacattttggcatgcctgtaaccataggctagcaaaaca |
100 |
Q |
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| T |
11759501 |
ttaaaaattgtaccagctttaaataaaatatctataagattatagaaattattataatattaacattttggcatgcctgtaaccataggctagcaaaaca |
11759600 |
T |
|
| Q |
101 |
acttatacaacaatgatctaaaaatttaagaatttaatttgtatatagcgatactgttaaacttttttacacgcccataaaaataaattttgaaatttaa |
200 |
Q |
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| T |
11759601 |
acttatacaacaatgatctaaaaatttaagaatttaatttgtatataacgatactgtaaaacttttttacacgcgcataaaaataaattttaaaatttaa |
11759700 |
T |
|
| Q |
201 |
tttggttgttttattgttacattacatgattgtcttcttctcatccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759701 |
tttggttgttttattgttacattacatgattgtcttcttctcatccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttat |
11759800 |
T |
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| Q |
301 |
tgctaccatttttattttatgctatctataatcctcatct |
340 |
Q |
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| T |
11759801 |
tgctaccatttttattttatgctatctataatcctcatct |
11759840 |
T |
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