View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8528_high_2 (Length: 694)
Name: NF8528_high_2
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8528_high_2 |
 | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 568; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 25064795 - 25065454
Alignment:
| Q |
1 |
tgattaaaataaattaattagatgggagagaatgattgttcaaaatacatagagagaaagttaccaaagagagagaattgaaaggtagataatctgcatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25064795 |
tgattaaaataaattaattagatgggagagaatgattgttcaaaatagatagagagaaagttaccaaagagagagaattgaaaggtagataatctgcatc |
25064894 |
T |
|
| Q |
101 |
ccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtattgttttgaagagaagcactgcatcagttcaaggaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25064895 |
ccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtattgttttgaagagaagcactgcatcagttcaaggaagat |
25064994 |
T |
|
| Q |
201 |
aaatggattaatcattaacatactcaaggcactgaaaaggtatcagatatgtaaactaatggtgtagcaannnnnnngacataagaatgtgttcttggag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25064995 |
aaatggattaatcattaacatactcaaggcactgaaaaggtatcagatgtgtaaactaatggtgtagcaatttttttgacataagaatgtgttcttggag |
25065094 |
T |
|
| Q |
301 |
gtgtgttcacgaggaggatccaagaatcatgcaatcgagtaggtttaggaaagccggatggatccgtacaatggaaccacatatgcaaatgaatacattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25065095 |
gtgtgttcacgaggaggatccaagaatcatgcaatcgagtaggtttaggaaagccggatggatccgtaaaatggaaccacatatgcaaatgaatacattg |
25065194 |
T |
|
| Q |
401 |
gaaacattgaagtcgtcctcaagtatcataacgttcaaggagcggtcaaatttaggctcttttcacggtgcctaatgggagccttgaaattatgcaaaag |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25065195 |
aaaacattgaagtcgtcctcaagtatcataacgttcgaggagcggtcaaatttaggctcttttcacggtgcctaatgggagccttgaaattatgcaaaag |
25065294 |
T |
|
| Q |
501 |
cttgagagaagagtccatcgactcttgggaggaactacgtatacaattcactacccatttcactacatcgagaaggcaaatcaagagggttgcgaccttg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
25065295 |
cttgagagaagagtccatcgactcttgggaggaactatgtatacaattcacgacccatttcactacatcgagaaggcaaaccaagaaggttgcgaccttg |
25065394 |
T |
|
| Q |
601 |
aga-ctatcatccaaggaa--agagagcatgttcgagactacattgaaaggttcaacaaa |
657 |
Q |
| |
|
| | ||||||||||||||| |||||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
25065395 |
aaagctatcatccaaggaaagagagagaatgttcgagactacatcgaaaagttcaacaaa |
25065454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 25086231 - 25086398
Alignment:
| Q |
1 |
tgattaaaataaattaattagatgggagagaatgattgttcaaaatacatagagagaaagttaccaaagagagagaattgaaaggtagataatctgcatc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| | ||||||||||||||||| |||||| |
|
|
| T |
25086231 |
tgatgaaaataaattaattagatgggagagaatgattgttcaaaatagatagagaaaaagttaccagagagaggggattgaaaggtagataatatgcatc |
25086330 |
T |
|
| Q |
101 |
ccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtattgtttt |
168 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25086331 |
ccataacttctgagttgaaatagttttctctatcttctcaatgttatgatcagatggtgacttgtttt |
25086398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 25440521 - 25440610
Alignment:
| Q |
126 |
ttctctatcttctcaatgttatgatcagatgg-tgtattgtttt--gaagagaagcactgcatcagttcaaggaagataaatggattaat |
212 |
Q |
| |
|
||||||| |||||| ||||||||||| | || ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
25440521 |
ttctctagtttctcactgttatgatcaaaagggtgtattgttttttgaagagaagcactgcatcagttgaaggaagacaaatggattaat |
25440610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 663
Target Start/End: Original strand, 38108 - 38142
Alignment:
| Q |
629 |
ttcgagactacattgaaaggttcaacaaagaagtt |
663 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38108 |
ttcgagactacatcgaaaggttcaacaaagaagtt |
38142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 631 - 665
Target Start/End: Complemental strand, 390252 - 390218
Alignment:
| Q |
631 |
cgagactacattgaaaggttcaacaaagaagttgt |
665 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
390252 |
cgagactacattgagaggttcaacaaagaagttgt |
390218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 665
Target Start/End: Complemental strand, 29567314 - 29567257
Alignment:
| Q |
610 |
tccaaggaaagag--agcatgttcgagactacattgaaaggttcaacaaagaagttgt |
665 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
29567314 |
tccaaggaaagagtgagcctcttcgagactacatcgagaggttcaacaaagaagttgt |
29567257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20896217 - 20896254
Alignment:
| Q |
1 |
tgattaaaataaattaattagatgggagagaatgattg |
38 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
20896217 |
tgattaaaataaattatttagatgagagagaatgattg |
20896254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30643622 - 30643659
Alignment:
| Q |
1 |
tgattaaaataaattaattagatgggagagaatgattg |
38 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
30643622 |
tgattaaaataaattatttagatgagagagaatgattg |
30643659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 629 - 661
Target Start/End: Complemental strand, 15412939 - 15412907
Alignment:
| Q |
629 |
ttcgagactacattgaaaggttcaacaaagaag |
661 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
15412939 |
ttcgagactacatcgaaaggttcaacaaagaag |
15412907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19431420 - 19431457
Alignment:
| Q |
1 |
tgattaaaataaattaattagatgggagagaatgattg |
38 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
19431420 |
tgattaaaataaattatttagatgagagagaatgattg |
19431457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University