View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8528_high_3 (Length: 522)
Name: NF8528_high_3
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8528_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 77 - 501
Target Start/End: Original strand, 29813847 - 29814266
Alignment:
| Q |
77 |
tgacacatgctgcatgcacaatcatgttaacgaaagtacgtagttaaaagtaaatttgtatacggttattattatcatgtaaaaactttgtattcatgtt |
176 |
Q |
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| T |
29813847 |
tgacacatgctgcatgcacaatcatgttaacgaaagtacgtagttaaaagtaaatttgtatacagttattattatcatgtaaaaactttgtattcatgtt |
29813946 |
T |
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| Q |
177 |
ttctttatattgatcagcaaaaatttactatcaaaagttagatattatttgtagagaaaagtatacataaaattttcaaataacacgacaacatgaaaat |
276 |
Q |
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| T |
29813947 |
ttctttatattgatcagcaaaaatttactatcaaaagttagatatt---tgtagagaaaagta--cataaaattttcaaataacacgacaacatgaaaat |
29814041 |
T |
|
| Q |
277 |
tttcattaaattatccgttgtttcatctacatctcctcaccaacgatagttatgttacaagacagtttgcggattttgctcccctgagtacaaatcttat |
376 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29814042 |
tttcattaaattatcctttgtttcatctacatctccccaccaacgatagttatgttacaagacagtttgcggattttgctcccctgagtacaaatcttat |
29814141 |
T |
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| Q |
377 |
ttttctcatgtacaacgtgatttcttccacaagtatagttaaacaaaattacccaagtgagagaccaaaccgacataaccttctttcaaacctcagatct |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29814142 |
ttttctcatgtacaacgtgatttcttccacaagtatagttaaacaaaattacccaagtgagagaccaaaccgacataaccttctttcaaacctcagatct |
29814241 |
T |
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| Q |
477 |
tctccgacacataatggatcgacgg |
501 |
Q |
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| T |
29814242 |
tctccgacacataatggatcgacgg |
29814266 |
T |
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