View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8528_high_5 (Length: 453)

Name: NF8528_high_5
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8528_high_5
NF8528_high_5
[»] chr6 (37 HSPs)
chr6 (171-443)||(34064000-34064275)
chr6 (18-142)||(34063840-34063964)
chr6 (268-443)||(12449594-12449769)
chr6 (249-443)||(19730602-19730795)
chr6 (364-443)||(9403173-9403252)
chr6 (335-442)||(31295547-31295654)
chr6 (349-436)||(34187285-34187372)
chr6 (351-441)||(14080472-14080561)
chr6 (334-441)||(11087473-11087580)
chr6 (349-440)||(22497312-22497403)
chr6 (344-443)||(27860959-27861058)
chr6 (353-441)||(689870-689958)
chr6 (351-437)||(3404879-3404965)
chr6 (384-441)||(19305485-19305542)
chr6 (349-429)||(9277325-9277405)
chr6 (363-443)||(16343579-16343659)
chr6 (395-443)||(19277087-19277135)
chr6 (333-443)||(12488007-12488117)
chr6 (349-443)||(23768179-23768273)
chr6 (384-441)||(18147327-18147384)
chr6 (333-441)||(30680962-30681070)
chr6 (349-437)||(33596847-33596935)
chr6 (349-440)||(12424328-12424419)
chr6 (354-441)||(34573007-34573094)
chr6 (335-429)||(9292044-9292138)
chr6 (349-441)||(20148303-20148393)
chr6 (349-441)||(22184435-22184525)
chr6 (384-429)||(25008415-25008460)
chr6 (389-441)||(17380123-17380175)
chr6 (335-439)||(19331695-19331799)
chr6 (349-441)||(22572031-22572122)
chr6 (386-441)||(10115698-10115753)
chr6 (387-441)||(15480354-15480408)
chr6 (379-441)||(16130984-16131046)
chr6 (373-441)||(14268441-14268509)
chr6 (391-441)||(18566685-18566735)
chr6 (350-419)||(2907893-2907962)
[»] chr3 (23 HSPs)
chr3 (249-442)||(12516071-12516264)
chr3 (259-443)||(25495835-25496018)
chr3 (244-443)||(12731572-12731771)
chr3 (333-443)||(14860110-14860220)
chr3 (249-441)||(431329-431521)
chr3 (373-441)||(17143762-17143830)
chr3 (373-443)||(12251998-12252068)
chr3 (373-442)||(1770835-1770904)
chr3 (248-421)||(17485657-17485830)
chr3 (387-443)||(9781517-9781573)
chr3 (391-441)||(28715501-28715551)
chr3 (384-441)||(21342300-21342357)
chr3 (384-441)||(30606949-30607006)
chr3 (349-441)||(9801097-9801188)
chr3 (335-441)||(2311847-2311953)
chr3 (384-441)||(28723787-28723844)
chr3 (333-440)||(21652613-21652719)
chr3 (384-441)||(16704423-16704480)
chr3 (333-401)||(8122967-8123035)
chr3 (333-421)||(21649383-21649471)
chr3 (377-419)||(12108433-12108475)
chr3 (384-441)||(13085086-13085143)
chr3 (373-433)||(17396745-17396805)
[»] scaffold0002 (2 HSPs)
scaffold0002 (249-443)||(379602-379796)
scaffold0002 (368-443)||(121022-121097)
[»] chr7 (20 HSPs)
chr7 (258-443)||(16987103-16987288)
chr7 (263-443)||(34854143-34854323)
chr7 (262-443)||(13292134-13292315)
chr7 (333-441)||(39879357-39879465)
chr7 (336-441)||(9135374-9135479)
chr7 (245-441)||(12644667-12644864)
chr7 (246-441)||(9867952-9868147)
chr7 (369-443)||(5929022-5929096)
chr7 (363-441)||(10287609-10287687)
chr7 (333-441)||(5863157-5863265)
chr7 (333-441)||(21161212-21161319)
chr7 (349-440)||(5925489-5925580)
chr7 (350-440)||(1979049-1979139)
chr7 (353-441)||(7486535-7486623)
chr7 (363-441)||(26762924-26763002)
chr7 (349-440)||(18773967-18774058)
chr7 (363-429)||(9573451-9573517)
chr7 (357-398)||(21265741-21265782)
chr7 (333-393)||(2226613-2226673)
chr7 (337-381)||(26562891-26562935)
[»] chr2 (24 HSPs)
chr2 (249-443)||(19050446-19050640)
chr2 (248-439)||(15825040-15825230)
chr2 (262-443)||(18135770-18135951)
chr2 (333-437)||(45714965-45715069)
chr2 (349-441)||(12168958-12169051)
chr2 (373-442)||(18770324-18770393)
chr2 (259-443)||(15390596-15390780)
chr2 (297-441)||(20120281-20120425)
chr2 (249-441)||(29137787-29137979)
chr2 (258-441)||(10923178-10923361)
chr2 (373-439)||(24157321-24157387)
chr2 (336-441)||(19919079-19919184)
chr2 (373-441)||(3586373-3586441)
chr2 (373-441)||(24499799-24499867)
chr2 (384-441)||(36267519-36267576)
chr2 (333-441)||(27846532-27846640)
chr2 (349-443)||(29711004-29711096)
chr2 (363-441)||(12127676-12127754)
chr2 (350-441)||(18772239-18772326)
chr2 (333-441)||(45258165-45258273)
chr2 (333-377)||(17671943-17671987)
chr2 (349-429)||(36022447-36022527)
chr2 (333-377)||(17626871-17626915)
chr2 (365-417)||(30638565-30638617)
[»] chr1 (25 HSPs)
chr1 (259-441)||(52565475-52565658)
chr1 (258-443)||(16299585-16299769)
chr1 (348-443)||(23728831-23728926)
chr1 (260-433)||(14255051-14255224)
chr1 (353-443)||(25408086-25408176)
chr1 (349-441)||(1659802-1659894)
chr1 (373-441)||(12177396-12177464)
chr1 (349-441)||(22414761-22414853)
chr1 (245-436)||(4601505-4601696)
chr1 (354-441)||(5671761-5671848)
chr1 (333-441)||(16030365-16030473)
chr1 (349-437)||(26977726-26977814)
chr1 (353-441)||(33101520-33101608)
chr1 (349-433)||(48637537-48637621)
chr1 (353-441)||(16050384-16050472)
chr1 (349-441)||(23280275-23280365)
chr1 (373-441)||(34273097-34273165)
chr1 (349-408)||(21098891-21098950)
chr1 (349-422)||(2612695-2612768)
chr1 (349-410)||(3590813-3590874)
chr1 (353-428)||(43344469-43344543)
chr1 (249-315)||(29217656-29217722)
chr1 (333-441)||(5459722-5459829)
chr1 (384-439)||(21682605-21682660)
chr1 (333-400)||(2140998-2141065)
[»] chr4 (17 HSPs)
chr4 (249-443)||(15742164-15742358)
chr4 (349-443)||(5518526-5518620)
chr4 (249-441)||(12683672-12683863)
chr4 (373-441)||(47253287-47253355)
chr4 (373-443)||(15514572-15514642)
chr4 (349-440)||(14602029-14602120)
chr4 (333-441)||(19809672-19809779)
chr4 (349-441)||(29157088-29157180)
chr4 (363-442)||(16012483-16012562)
chr4 (349-440)||(1638332-1638422)
chr4 (383-441)||(19643722-19643780)
chr4 (373-437)||(14003081-14003145)
chr4 (349-418)||(13171065-13171134)
chr4 (373-440)||(25066154-25066221)
chr4 (387-429)||(10981890-10981932)
chr4 (333-417)||(3981920-3982002)
chr4 (352-441)||(2674587-2674672)
[»] scaffold0294 (1 HSPs)
scaffold0294 (373-441)||(256-324)
[»] chr5 (18 HSPs)
chr5 (255-443)||(22865653-22865841)
chr5 (256-443)||(24647182-24647368)
chr5 (259-443)||(25828999-25829183)
chr5 (245-443)||(25537287-25537485)
chr5 (354-441)||(26994619-26994706)
chr5 (384-441)||(22903114-22903171)
chr5 (349-419)||(19846055-19846125)
chr5 (335-441)||(27083251-27083356)
chr5 (334-436)||(24546318-24546415)
chr5 (349-433)||(26348100-26348184)
chr5 (363-437)||(19993182-19993256)
chr5 (363-441)||(25333735-25333813)
chr5 (349-429)||(8938898-8938978)
chr5 (333-441)||(20025253-20025361)
chr5 (377-441)||(32418499-32418563)
chr5 (333-419)||(16621178-16621264)
chr5 (349-419)||(26163621-26163691)
chr5 (363-410)||(18799780-18799827)
[»] scaffold0205 (2 HSPs)
scaffold0205 (351-441)||(22874-22964)
scaffold0205 (258-443)||(10926-11111)
[»] chr8 (22 HSPs)
chr8 (349-439)||(24576598-24576688)
chr8 (258-439)||(3459498-3459679)
chr8 (373-437)||(21416748-21416812)
chr8 (387-441)||(6928103-6928157)
chr8 (335-441)||(26916911-26917017)
chr8 (351-441)||(30477629-30477719)
chr8 (318-441)||(18322898-18323021)
chr8 (260-442)||(11776255-11776429)
chr8 (292-441)||(24507387-24507535)
chr8 (385-441)||(13754780-13754836)
chr8 (389-441)||(17698298-17698350)
chr8 (333-416)||(17319657-17319743)
chr8 (349-420)||(1909742-1909813)
chr8 (349-440)||(4565407-4565498)
chr8 (390-441)||(24070879-24070930)
chr8 (351-441)||(13764977-13765067)
chr8 (373-443)||(24677598-24677668)
chr8 (363-420)||(5859815-5859872)
chr8 (398-443)||(23243819-23243864)
chr8 (349-421)||(23269232-23269304)
chr8 (351-441)||(17927717-17927807)
chr8 (333-437)||(15058005-15058109)
[»] scaffold0380 (1 HSPs)
scaffold0380 (333-443)||(6871-6981)
[»] scaffold0505 (1 HSPs)
scaffold0505 (333-441)||(7855-7963)
[»] scaffold0140 (1 HSPs)
scaffold0140 (349-441)||(6284-6376)
[»] scaffold0005 (1 HSPs)
scaffold0005 (349-440)||(215258-215349)
[»] scaffold0074 (1 HSPs)
scaffold0074 (261-437)||(35151-35327)
[»] scaffold0464 (1 HSPs)
scaffold0464 (258-443)||(11411-11593)
[»] scaffold0263 (1 HSPs)
scaffold0263 (373-443)||(20508-20578)
[»] scaffold0291 (2 HSPs)
scaffold0291 (368-441)||(15443-15516)
scaffold0291 (354-441)||(8590-8676)
[»] scaffold0103 (1 HSPs)
scaffold0103 (344-443)||(40777-40876)
[»] scaffold0101 (1 HSPs)
scaffold0101 (333-416)||(10756-10839)
[»] scaffold0013 (1 HSPs)
scaffold0013 (344-443)||(4435-4534)
[»] scaffold0023 (1 HSPs)
scaffold0023 (384-441)||(95823-95880)
[»] scaffold0360 (1 HSPs)
scaffold0360 (386-441)||(13945-14000)
[»] scaffold0054 (1 HSPs)
scaffold0054 (363-441)||(68815-68891)
[»] scaffold0479 (2 HSPs)
scaffold0479 (258-312)||(4935-4989)
scaffold0479 (403-441)||(5078-5116)
[»] scaffold0092 (1 HSPs)
scaffold0092 (373-443)||(21629-21699)
[»] scaffold0057 (1 HSPs)
scaffold0057 (373-439)||(73817-73883)
[»] scaffold0438 (1 HSPs)
scaffold0438 (259-313)||(4279-4333)
[»] scaffold0096 (1 HSPs)
scaffold0096 (350-408)||(42236-42294)
[»] scaffold0518 (1 HSPs)
scaffold0518 (363-437)||(8970-9048)
[»] scaffold0174 (1 HSPs)
scaffold0174 (333-441)||(29291-29397)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 8e-96; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 171 - 443
Target Start/End: Original strand, 34064000 - 34064275
Alignment:
Q  171 attaaaagtgatggattgtatggctcatcaagtgtattattt---agcacgataagaagagttgtccacaaaaaagtatattgatatgttcggtgagaac 267  Q
    ||||||||||||||||||||| ||||||||||||||||||||   ||||||| |||||||||||||||||||||| ||||||||||| | || |||||||    
T  34064000 attaaaagtgatggattgtatagctcatcaagtgtattatttcaaagcacgagaagaagagttgtccacaaaaaaatatattgatatatccgatgagaac 34064099  T
Q  268 ggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggtgtgtgcag 367  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  34064100 ggttgattggtaacaacggcagagaatgtttcagtgtgacggtaacgacttttggtatgacggtaatgagtcttcacggtagaacgaaaggtgtgtgcag 34064199  T
Q  368 acacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
     ||| ||| |||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  34064200 gcacgttaacactatgacgttcaagtcagtaatgaaactaagaaagagtgtgtaagaagtgttgtgaaaagtgatg 34064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 34063840 - 34063964
Alignment:
Q  18 tcattgttgttggattcgattctgtcgaatgttgaagtgaatgaaagaacagaaccagagaaagagttatcgtgttctagataaggaagctgtttttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34063840 tcattgttgttggattcgattctgtcgaatgttgaagtgaatgaaagaacagaaccagagaaagagttatcgtgttctagataaggaagctgtttttact 34063939  T
Q  118 tgcactcgtgtaatttttgaaattt 142  Q
    |||||||||||||||||||||||||    
T  34063940 tgcactcgtgtaatttttgaaattt 34063964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 268 - 443
Target Start/End: Complemental strand, 12449769 - 12449594
Alignment:
Q  268 ggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggtgtgtgcag 367  Q
    |||||||| ||||| |||| |||||||| ||  ||||||| |||||||| ||||| |   |||| |||||||||| |||| | ||||||||||| || ||    
T  12449769 ggttgagtagcaacgacggtagagaatgctctggtgtgacagtaacgactttcggcaccgcggtgatgagtcttcgtggtgggacgaaaggtgtctgtag 12449670  T
Q  368 acacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
     ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  12449669 gcacgttagcactctgacgctcaagtcagtaatggagctgaaaaagagtgtgtaagaagtgttgtggaaagtgatg 12449594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 249 - 443
Target Start/End: Complemental strand, 19730795 - 19730602
Alignment:
Q  249 tgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggtt 348  Q
    |||| ||| |||| |||| ||||||||||||||  | |||||||||| ||| ||||| |||||||||| ||||| | |||||   ||||||||| ||||     
T  19730795 tgatctgtccggtaagaaaggttgagtggcaacggctgcagagaatgctccggtgtggcggtaacgactttcggcacgacggcgttgagtcttcgtggtg 19730696  T
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||  |||| ||  ||||| ||  |||||||||  |||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  19730695 gaagtaaag-tgcatgcaggcatgttagcactccaacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgtcgtgtaaagtgatg 19730602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 364 - 443
Target Start/End: Original strand, 9403173 - 9403252
Alignment:
Q  364 gcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||| ||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  9403173 gcaggcacgttagaactccgacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgttgtggaaagtgatg 9403252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 335 - 442
Target Start/End: Complemental strand, 31295654 - 31295547
Alignment:
Q  335 gagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtga 434  Q
    ||||||||  ||| ||||||||| ||  ||||| ||  ||||||||  ||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  31295654 gagtcttcgaggtggaacgaaagttgcctgcaggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtga 31295555  T
Q  435 aaagtgat 442  Q
    ||||||||    
T  31295554 aaagtgat 31295547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 436
Target Start/End: Original strand, 34187285 - 34187372
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaa 436  Q
    ||||||||||||| ||||||||| ||||||| |  || |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  34187285 gaacgaaaggtgtctgcagacacgttagcacaccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgtggtgaaa 34187372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 14080472 - 14080561
Alignment:
Q  351 acgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||  | ||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||    
T  14080472 acgaaaggtgcctacaggcacattagcactctgacgctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaagtga 14080561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 441
Target Start/End: Original strand, 11087473 - 11087580
Alignment:
Q  334 tgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtg 433  Q
    |||||||||  ||| ||||||||| ||| |||||||||||||||||| |||| || |||||||||||| |||||||||||||| ||||    ||||||||    
T  11087473 tgagtcttcgcggtggaacgaaagctgtctgcagacacattagcactttgacccttaagtcagtaatgtaactgagaaagagtatgtagattgtgttgtg 11087572  T
Q  434 aaaagtga 441  Q
    ||||||||    
T  11087573 aaaagtga 11087580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 349 - 440
Target Start/End: Complemental strand, 22497403 - 22497312
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    ||||||||||||  ||||||||| ||||||||| ||||||||||||||||||||||| || | |||| || ||| |||||||||||||||||    
T  22497403 gaacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaatggaacagaaagagagagtataaaaagtgttgtgaaaagtg 22497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 443
Target Start/End: Complemental strand, 27861058 - 27860959
Alignment:
Q  344 tggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||| |||| |||||||| ||||| ||  |||| ||||| || |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||    
T  27861058 tggtggaacaaaaggtgtctgcaggcatgttagtactctaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtgatg 27860959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 441
Target Start/End: Complemental strand, 689958 - 689870
Alignment:
Q  353 gaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||| |||||  |||||||||||   | |||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  689958 gaaaggtgtttgcaggtacattagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtga 689870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 437
Target Start/End: Complemental strand, 3404965 - 3404879
Alignment:
Q  351 acgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaa 437  Q
    |||||| |||| || || ||||||| |||||| || || ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  3404965 acgaaatgtgtctgtaggcacattaacactctaacacttaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaa 3404879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 19305485 - 19305542
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  19305485 acgctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtga 19305542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 429
Target Start/End: Complemental strand, 9277405 - 9277325
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 429  Q
    |||||||||||   ||||||||| |||||||| | ||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  9277405 gaacgaaaggttcctgcagacacgttagcactataacgctcaagtcagtattggaactgagaaagagtatgtaaaaagtgt 9277325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 16343579 - 16343659
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||| ||| |||||||||  || |||||||||||||||||||||||| |||  ||||||||||||||||| |||||||||    
T  16343579 tgcaggcacgttagcactccaacactcaagtcagtaatggaactgagagagaaagtgtaagaagtgttgtggaaagtgatg 16343659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 19277135 - 19277087
Alignment:
Q  395 agtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19277135 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 19277087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 443
Target Start/End: Complemental strand, 12488117 - 12488007
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    |||||||||| | || ||||||| ||||  ||||  ||| |||||||||| ||||| |||||| |||| ||||| | | |||||||||||| ||||||||    
T  12488117 atgagtcttcgttgtggaacgaagggtgcatgcatgcacgttagcactctaacgctgaagtcaataatagaactaaaatagagtgtgtaagtagtgttgt 12488018  T
Q  433 gaaaagtgatg 443  Q
    |||||||||||    
T  12488017 gaaaagtgatg 12488007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 443
Target Start/End: Original strand, 23768179 - 23768273
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||||| ||||| | ||| || ||||||||||  | ||||||||||||||| ||||||| | | |||||||||||||||||||| |||||||||    
T  23768179 gaacgaagggtgtttacaggcatattagcactccaatgctcaagtcagtaattgaactgaaagatagtgtgtaagaagtgttgtggaaagtgatg 23768273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 18147327 - 18147384
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||||    
T  18147327 acgctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtga 18147384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 30680962 - 30681070
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||  ||| | ||||||||||| ||||  ||| |||||||||  |||||||||||||||||| |||||| |||||| |||||  | || ||||    
T  30680962 atgagtcttcgcggtgggacgaaaggtgtctgcaatcacgttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgtagaatgtattgt 30681061  T
Q  433 gaaaagtga 441  Q
    |||||||||    
T  30681062 gaaaagtga 30681070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 33596847 - 33596935
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaa 437  Q
    |||||||||||   ||||| ||||||| |||||| |||||||| ||||||||| |||| ||||| ||||||||  ||||||||||||||    
T  33596847 gaacgaaaggtacctgcaggcacattaacactctaacgctcaactcagtaatgaaactaagaaaaagtgtgtagaaagtgttgtgaaaa 33596935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 440
Target Start/End: Complemental strand, 12424419 - 12424328
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    ||||||||||||  ||||| ||| ||||||||  |||  ||||||||||||||||||||||| |||  || ||| |||||||||||||||||    
T  12424419 gaacgaaaggtgcctgcaggcacgttagcactacgacaatcaagtcagtaatggaactgagagagaaagtctaaaaagtgttgtgaaaagtg 12424328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 34573094 - 34573007
Alignment:
Q  354 aaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||| |||||||||||||  ||||  |||||||||| |||||| ||||| ||||| ||||||||  |||||| |||||||||||    
T  34573094 aaaggtgtctgcagacacattaatactccaacgctcaagttagtaatagaactaagaaaaagtgtgtagaaagtgtggtgaaaagtga 34573007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Complemental strand, 9292138 - 9292044
Alignment:
Q  335 gagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 429  Q
    ||||||| | ||| ||||||||||||  ||||  ||| ||||||| || ||||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  9292138 gagtctttacggtggaacgaaaggtgcctgcaagcacgttagcacgctaacgctcaagtcagtattggaactgagaaatagtatgtaaaaagtgt 9292044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 20148303 - 20148393
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||| |||  ||||||||| |||||||||   ||||||||| |||||||||| |||||||||  |||||  ||||||||||||||||||    
T  20148303 gaacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaaga--gtgtagaaagtgttgtgaaaagtga 20148393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 441
Target Start/End: Complemental strand, 22184525 - 22184435
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||| |||  ||||||||| |||||||||   ||||||||| |||||||||| |||||||||  |||||  ||||||||||||||||||    
T  22184525 gaacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaaga--gtgtagaaagtgttgtgaaaagtga 22184435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 25008460 - 25008415
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 429  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  25008460 acgctcaagtcagtaatggaattgagaaagagtgtgtaaaaagtgt 25008415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 441
Target Start/End: Original strand, 17380123 - 17380175
Alignment:
Q  389 caagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||| |||||||||||||||||| |  ||||||||||||||||||    
T  17380123 caagtcagtaatagaactgagaaagagtgtgaataaagtgttgtgaaaagtga 17380175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 439
Target Start/End: Complemental strand, 19331799 - 19331695
Alignment:
Q  335 gagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtga 434  Q
    ||||||||  ||| ||||||||||||  |||||  || |||| |||| |||||| ||||||||||||||||| |||||||| || ||  ||||||||||     
T  19331799 gagtcttcgcggtggaacgaaaggtgcttgcaggtacgttagtactccgacgcttaagtcagtaatggaactaagaaagagagtatagaaagtgttgtgt 19331700  T
Q  435 aaagt 439  Q
    |||||    
T  19331699 aaagt 19331695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 22572031 - 22572122
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||| |||||||  ||||| ||| |||||||| ||||||||| ||||||||||||| ||| ||||||||||||  | |||||||| |||||||    
T  22572031 gaacaaaaggtggctgcaggcacgttagcactatgacgctcatgtcagtaatggaattga-aaagagtgtgtagaaggtgttgtgtaaagtga 22572122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 10115753 - 10115698
Alignment:
Q  386 gctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||||||| ||||||||||||| | |||| |||| |||||||||||||    
T  10115753 gctcaagtcagtaatgaaactgagaaagagcgagtaaaaagttttgtgaaaagtga 10115698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 15480408 - 15480354
Alignment:
Q  387 ctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||| ||||| |||||||||| ||||||||  ||||||||||||||||||    
T  15480408 ctcaagtcaataatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaagtga 15480354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 16130984 - 16131046
Alignment:
Q  379 ctctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||| ||||||||||||||||||||| |||||||||  |  ||||||||||||| ||||    
T  16130984 ctctgacggtcaagtcagtaatggaactgataaagagtgtacagaaagtgttgtgaaacgtga 16131046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 14268441 - 14268509
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||  ||||| ||||||||||||||||| ||| | ||||||||  ||||||| ||||||||||    
T  14268441 ttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 14268509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 18566685 - 18566735
Alignment:
Q  391 agtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||||||||||||||| ||||||  ||| ||||| ||||||||    
T  18566685 agtcagtaatggaactgagaaagattgtgtagaaagcgttgtaaaaagtga 18566735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 419
Target Start/End: Original strand, 2907893 - 2907962
Alignment:
Q  350 aacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtg 419  Q
    |||||||||||| ||||| ||| ||||||| || |||||||| ||| || ||||| |||||||| |||||    
T  2907893 aacgaaaggtgtctgcagtcacgttagcacgctaacgctcaaatcattattggaattgagaaagggtgtg 2907962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 249 - 442
Target Start/End: Original strand, 12516071 - 12516264
Alignment:
Q  249 tgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggtt 348  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||||| | | |||||| || |||||| | | | | ||||   || ||||||||||||     
T  12516071 tgatatgttcgatgagaacggttgagtggcaacagcggtagagaatgcttcggtgtgatggcaacgacttccagcacgacgacgatcagtcttcatggtg 12516170  T
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgat 442  Q
     |||||||||||  ||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  12516171 aaacgaaaggtgcctgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtgat 12516264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 259 - 443
Target Start/End: Original strand, 25495835 - 25496018
Alignment:
Q  259 ggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaagg 358  Q
    |||||||||  ||||||||||||  || ||||||||||||| |||||||||||||| | | ||| | |||||| |||| |||||  ||| |  || ||||    
T  25495835 ggtgagaacaattgagtggcaacggcgacagagaatgttccggtgtgacggtaacggcttccggcacgacggtgatgattcttcgcggtggggcgtaagg 25495934  T
Q  359 tgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||  ||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||||||| ||||  ||||||||||    
T  25495935 tgcctgcagacacgttagcactctgac-ctcaagtcagtaatcaaactgagaaagagtgtgtaagaagagttgaaaaaagtgatg 25496018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 443
Target Start/End: Complemental strand, 12731771 - 12731572
Alignment:
Q  244 tatattgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttca 343  Q
    |||||||||  || |||||||||||||||||| |||||| |||||||||||||| | |||||||||||| | | | ||| | | |||  | ||||||||     
T  12731771 tatattgatcggtccggtgagaacggttgagtagcaacagcggcagagaatgtttcggtgtgacggtaaaggcttccggcacggcggcgaagagtcttcg 12731672  T
Q  344 tggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
     ||| ||||||| ||||  | ||  ||  |||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  12731671 aggtggaacgaatggtgcctacaaccatgttagtactccgacgctcacgtcattaatggaactgagaaagagtgtataagaagtgttgtgaaaagtgatg 12731572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 333 - 443
Target Start/End: Complemental strand, 14860220 - 14860110
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    |||| ||||| |||| ||||||||||||  ||||| ||||||||||||||||  ||||| |||||||||||||||||||| ||| |||||||||||||||    
T  14860220 atgaatcttcgtggtggaacgaaaggtgcttgcaggcacattagcactctgattctcaactcagtaatggaactgagaaacagtttgtaagaagtgttgt 14860121  T
Q  433 gaaaagtgatg 443  Q
    |||||||||||    
T  14860120 gaaaagtgatg 14860110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 441
Target Start/End: Complemental strand, 431521 - 431329
Alignment:
Q  249 tgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggtt 348  Q
    |||||||| |||||||||||| |||||||||||    ||||| |||| ||| || ||||||||||| | | ||||| |  |||  |||||||||  |||     
T  431521 tgatatgtccggtgagaacggatgagtggcaacggttgcagataatgctccggtttgacggtaacggcttccggtaggctggtgttgagtcttcgcggtg 431422  T
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||| ||||||||  | ||||||| ||||||||  ||||||||||||| ||||||||||||||||||||| ||   ||||| ||||||||||||    
T  431421 gaaagaaaggtgcctacagacacgttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgtgaaaagtga 431329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 17143830 - 17143762
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  17143830 ttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 17143762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 12251998 - 12252068
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||||||||||| ||||||||||||| | || |||||||||||||||||||| |||||||||||||||||    
T  12251998 ttagcactctgacactcaagtcagtaacgaaaatgagaaagagtgtgtaagaattgttgtgaaaagtgatg 12252068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 373 - 442
Target Start/End: Original strand, 1770835 - 1770904
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgat 442  Q
    |||| |||| ||||||||||| ||||||||||||||| |||||||||||  |||||||||||||||||||    
T  1770835 ttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtgat 1770904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 248 - 421
Target Start/End: Complemental strand, 17485830 - 17485657
Alignment:
Q  248 ttgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggt 347  Q
    ||||| ||| |||||||||||| |||||||||||  |||| || |||| |||||||||||||||||  | |  | || |  | |  |||||||||  |||    
T  17485830 ttgatctgtccggtgagaacggatgagtggcaacggcggcggataatgctccagtgtgacggtaacagcttatgatacggagctgttgagtcttcgcggt 17485731  T
Q  348 tgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgta 421  Q
     ||||||||||||| ||  | ||||||||||| |  ||||||||||||||||||||| |||||| |||||||||    
T  17485730 ggaacgaaaggtgtctgtgggcacattagcaccccaacgctcaagtcagtaatggaattgagaaggagtgtgta 17485657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 9781573 - 9781517
Alignment:
Q  387 ctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  9781573 ctcaaatcagtaatgtaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatg 9781517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 28715551 - 28715501
Alignment:
Q  391 agtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  28715551 agtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtga 28715501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 21342357 - 21342300
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||||||||||||||| ||||||||| ||  ||||||||||||||||||    
T  21342357 acgctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaaaagtga 21342300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 30606949 - 30607006
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||||    
T  30606949 acgctcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaagtga 30607006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 441
Target Start/End: Complemental strand, 9801188 - 9801097
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||  ||||  ||| |||||||||  || |||||||||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  9801188 gaacgaaaggtgcctgcaagcacgttagcactca-acactcaagtcagtaatagaacagagaaagagtgtgtagaaagtgttgtgaaaagtga 9801097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 441
Target Start/End: Complemental strand, 2311953 - 2311847
Alignment:
Q  335 gagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtga 434  Q
    |||||||| |||| ||| ||||||||| |||||| || |||||||||  |||||||| |||| || |||  ||||||||| ||||||  |||||||||||    
T  2311953 gagtcttcgtggtggaatgaaaggtgtctgcagatacgttagcactccaacgctcaaatcagcaagggatttgagaaagaatgtgtagaaagtgttgtga 2311854  T
Q  435 aaagtga 441  Q
    || ||||    
T  2311853 aaggtga 2311847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 28723844 - 28723787
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||| |||||||||| ||||||||||||||  || |||||||||||||||    
T  28723844 acgctcaagtcactaatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtga 28723787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 440
Target Start/End: Original strand, 21652613 - 21652719
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    |||||||||| |||| |||||||| |||  ||||  | ||||||||||   || |||||||||||||||||||| ||| ||| ||||||||||||||| |    
T  21652613 atgagtcttcgtggtggaacgaaacgtgcctgcaagc-cattagcacttaaactctcaagtcagtaatggaactaagagagaatgtgtaagaagtgttat 21652711  T
Q  433 gaaaagtg 440  Q
    | ||||||    
T  21652712 ggaaagtg 21652719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 16704423 - 16704480
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||| ||||||||||||||  |||||||||| |||||  ||||||||||||||||||    
T  16704423 acgctgaagtcagtaatggagttgagaaagagagtgtagaaagtgttgtgaaaagtga 16704480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 8123035 - 8122967
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatg 401  Q
    ||||||||||| |||  || ||||||||| ||||| ||| |||||||||  ||||||||||||||||||    
T  8123035 atgagtcttcacggtaaaatgaaaggtgtatgcaggcacgttagcactccaacgctcaagtcagtaatg 8122967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 21649383 - 21649471
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgta 421  Q
    ||||||||||  ||| ||||||||||||  ||||  ||| ||||||| |  ||| ||||||||||||||||||||||| ||| ||||||    
T  21649383 atgagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcaccccaacgatcaagtcagtaatggaactgagagagaatgtgta 21649471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 12108433 - 12108475
Alignment:
Q  377 cactctgacgctcaagtcagtaatggaactgagaaagagtgtg 419  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||    
T  12108433 cactccgacgctcaagttagtaatggaactgagaaagaatgtg 12108475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 13085143 - 13085086
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||| ||||| |||||||||||| | ||||  |||| |||||||||||||    
T  13085143 acgctcaagtcaataatgaaactgagaaagaatatgtagaaagtattgtgaaaagtga 13085086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 433
Target Start/End: Original strand, 17396745 - 17396805
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtg 433  Q
    ||||||||| |||  |||||||| |||||||||||||| |||  || ||||||||||||||    
T  17396745 ttagcactccgacaatcaagtcaataatggaactgagagagaaagtctaagaagtgttgtg 17396805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 249 - 443
Target Start/End: Original strand, 379602 - 379796
Alignment:
Q  249 tgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggtt 348  Q
    |||||||| |||| ||||||||||||||||||||  ||||||||||| ||| ||||||| |||||  | | ||||| | ||   ||||||||||  |||     
T  379602 tgatatgtccggtaagaacggttgagtggcaacagtggcagagaatgctccggtgtgactgtaacagcttccggtacggcgacgatgagtcttcgcggtg 379701  T
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||||||||||  |  || ||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  379702 gaacgaaaggtgcatctaggcacgttagcactttgacactgaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 379796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 443
Target Start/End: Complemental strand, 121097 - 121022
Alignment:
Q  368 acacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||| |||| ||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  121097 acacgttagtactctgatgcttaagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgatg 121022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 258 - 443
Target Start/End: Complemental strand, 16987288 - 16987103
Alignment:
Q  258 cggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaag 357  Q
    |||||||||||||||| ||| ||| | ||||||||||| ||| |||||||| ||||| | |  |||| | |||  ||||||||||  ||| |||||||||    
T  16987288 cggtgagaacggttgaatggtaacgagggcagagaatgctccggtgtgacgctaacggcttctggtacggcggcaatgagtcttcgcggtggaacgaaag 16987189  T
Q  358 gtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||  ||| | ||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16987188 gtgcatgcgggcacgttagcactctgacactcaagccagtaatggaattgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 16987103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 263 - 443
Target Start/End: Original strand, 34854143 - 34854323
Alignment:
Q  263 agaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggtgtg 362  Q
    ||||||||||| || ||||  |||  ||||||| |||  |||||||||||| || ||| ||||| | || |||| | ||| |||| ||||||| |||||     
T  34854143 agaacggttgaatgacaacggcggatgagaatgctccgatgtgacggtaacaactttccgtatggcagtgatgaatgttcgtggtggaacgaacggtgtt 34854242  T
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  34854243 tgcagacacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagtgatg 34854323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 262 - 443
Target Start/End: Complemental strand, 13292315 - 13292134
Alignment:
Q  262 gagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggtgt 361  Q
    ||||||||| ||||| ||||  |||||||||||| |||  ||||||||||||    | ||| | | |||  |||||||||| |||| ||| |||||||||    
T  13292315 gagaacggtcgagtgacaacggcggcagagaatgctccgatgtgacggtaacagtttccggcacggcggcgatgagtcttcgtggtggaaggaaaggtgt 13292216  T
Q  362 gtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
     |||||  || |||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  13292215 ctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatg 13292134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 39879357 - 39879465
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    |||| ||||| |||| ||||||||||||  ||||||||| ||| |||| | |||||||||||||||||| |||||||||||||||||||| |||||||||    
T  39879357 atgaatcttcgtggtggaacgaaaggtgcctgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgt 39879456  T
Q  433 gaaaagtga 441  Q
     ||||||||    
T  39879457 aaaaagtga 39879465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 441
Target Start/End: Complemental strand, 9135479 - 9135374
Alignment:
Q  336 agtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaa 435  Q
    |||||||| ||| ||||||||||||  |  || ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||    
T  9135479 agtcttcacggtggaacgaaaggtgcatataggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaa 9135380  T
Q  436 aagtga 441  Q
    ||||||    
T  9135379 aagtga 9135374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 245 - 441
Target Start/End: Original strand, 12644667 - 12644864
Alignment:
Q  245 atattgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcat 344  Q
    |||| ||||||| | ||||||||||||||||||||||||| ||| | |||  |   ||||||| ||||   | ||| ||| ||||   |||||||||||     
T  12644667 atatcgatatgtccagtgagaacggttgagtggcaacaacagcaaaaaatactatggtgtgacagtaatatctttcagtacgacgacgatgagtcttcac 12644766  T
Q  345 ggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgtt-gtgaaaagtga 441  Q
    ||| ||||||||||||  ||||| ||  ||||||||| |||||||| ||||||||||||||||||||| |||||||   ||||||| |||||||||||    
T  12644767 ggtggaacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtgttggtgaaaagtga 12644864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 441
Target Start/End: Complemental strand, 9868147 - 9867952
Alignment:
Q  246 tattgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatg 345  Q
    ||||||| ||| ||||||||| |  ||||||||||| ||| |||| |||| | |  ||||||||||||| | | | | | | |||  | ||||||||  |    
T  9868147 tattgatctgtccggtgagaatgaatgagtggcaacgacgacagataatgcttcgatgtgacggtaacggcttccagaacggcggcgacgagtcttcgcg 9868048  T
Q  346 gttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    || | ||||||||||  |||||  || ||||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||| ||||||||    
T  9868047 gtgggacgaaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgttaaaagtga 9867952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 443
Target Start/End: Complemental strand, 5929096 - 5929022
Alignment:
Q  369 cacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||||||||||||  || |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||    
T  5929096 cacattagcactccaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtgatg 5929022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 10287687 - 10287609
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||| ||| |||||||  | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  10287687 tgcaggcacgttagcaccttaacgctcaagtcagtaatggatctgagaaaaagtgtgtaagaagtgttgtgaaaagtga 10287609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 5863157 - 5863265
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||| ||| ||||||||  || |||||  ||| |||||||||  ||||||||||||||||| ||||||||||||||||||||  || ||||||    
T  5863157 atgagtcttcacggtagaacgaaatttgcgtgcaagcacgttagcactcaaacgctcaagtcagtaatcgaactgagaaagagtgtgtagaaaatgttgt 5863256  T
Q  433 gaaaagtga 441  Q
     ||||||||    
T  5863257 aaaaagtga 5863265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 21161212 - 21161319
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||  ||| ||||||||| ||| ||||| ||| |||||||||  |||||||||||||||||||| || |||||| |||||||  |||||||||    
T  21161212 atgagtcttcgcggtggaacgaaag-tgtctgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgt 21161310  T
Q  433 gaaaagtga 441  Q
    |||||||||    
T  21161311 gaaaagtga 21161319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 440
Target Start/End: Complemental strand, 5925580 - 5925489
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    ||||||||||||| ||||| ||| |||||||||  ||| ||||||||||||||||||||||| |||  || |||||||||| ||||||||||    
T  5925580 gaacgaaaggtgtctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagagagaaagtctaagaagtgtcgtgaaaagtg 5925489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 1979049 - 1979139
Alignment:
Q  350 aacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    |||||||||||  ||||  ||| |||| ||||||||||||||||||||||||||||||||| |||  || |||||||||||||||| ||||    
T  1979049 aacgaaaggtgcctgcaagcacgttagtactctgacgctcaagtcagtaatggaactgagagagaaagtctaagaagtgttgtgaagagtg 1979139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 441
Target Start/End: Original strand, 7486535 - 7486623
Alignment:
Q  353 gaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||  ||||| ||| |||||||||  |||||||| |||||||||||||||||||||| ||||||  | ||||||||||||||||    
T  7486535 gaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtga 7486623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 26763002 - 26762924
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||| ||| |||||||||  |||||||||||||||| |||||| | ||| ||||||||  ||||||||||||||||||    
T  26763002 tgcaggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtga 26762924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 440
Target Start/End: Original strand, 18773967 - 18774058
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    ||||||||||||  ||||| ||| ||||||||  |||| |||| |||||||||||||||||| |||  ||  ||||||||| ||||||||||    
T  18773967 gaacgaaaggtgcatgcaggcacgttagcacttcgacgatcaaatcagtaatggaactgagagagaaagtcaaagaagtgtagtgaaaagtg 18774058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 429
Target Start/End: Complemental strand, 9573517 - 9573451
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 429  Q
    ||||| ||| |||||||||  |||| ||||||| ||  |||||||||||||||||||||||||||||    
T  9573517 tgcaggcacgttagcactccaacgcacaagtcaatatgggaactgagaaagagtgtgtaagaagtgt 9573451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 21265782 - 21265741
Alignment:
Q  357 ggtgtgtgcagacacattagcactctgacgctcaagtcagta 398  Q
    ||||| |||||||||||||||||||| |||||||||| ||||    
T  21265782 ggtgtctgcagacacattagcactctaacgctcaagttagta 21265741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 2226613 - 2226673
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagt 393  Q
    |||| |||||| ||| | ||||||||||| ||||| |||||||||||||  ||||||||||    
T  2226613 atgaatcttcacggtgggacgaaaggtgtctgcaggcacattagcactccaacgctcaagt 2226673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 26562891 - 26562935
Alignment:
Q  337 gtcttcatggttgaacgaaaggtgtgtgcagacacattagcactc 381  Q
    ||||||| ||| ||||||||||||| ||||| |||||||||||||    
T  26562891 gtcttcacggtggaacgaaaggtgtctgcaggcacattagcactc 26562935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 443
Target Start/End: Complemental strand, 19050640 - 19050446
Alignment:
Q  249 tgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggtt 348  Q
    |||| |||||||| | ||||||||||||||| | |||| ||| |||| ||| ||||||| ||||| |  ||||  | ||| |  |||||| |||  |||     
T  19050640 tgatctgttcggtcaaaacggttgagtggcagcgacggaagaaaatgctccggtgtgacagtaacaattttcgacacgacagcgatgagtgttcgcggtg 19050541  T
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||||||||| | ||||||| | |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  19050540 gaacgaaaggtatttgcagacccgttagcactctgacgctcaagtcagtaatagaactaagaaagagagtgtaagaagtgttgtgaaaagtgatg 19050446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 248 - 439
Target Start/End: Original strand, 15825040 - 15825230
Alignment:
Q  248 ttgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggt 347  Q
    ||||| ||| |||||||||| |||||||| ||||   ||||||||||||||| |||||||| ||| | |   ||| | | |||| | |||||||  ||||    
T  15825040 ttgatctgtccggtgagaacagttgagtgacaacggtggcagagaatgttccggtgtgacgataatggctaccggcacggcggtaa-gagtctttgtggt 15825138  T
Q  348 tgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagt 439  Q
     |||||||| |||| ||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  15825139 ggaacgaaatgtgtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagt 15825230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 262 - 443
Target Start/End: Original strand, 18135770 - 18135951
Alignment:
Q  262 gagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggtgt 361  Q
    ||||||||| |||||||||| ||  ||| ||||  ||| |||||| |||||| || ||||||  | |||   |||||||||| ||| | | ||||||||     
T  18135770 gagaacggtcgagtggcaacgacaacagtgaattctccggtgtgatggtaaccactttcggtgcggcggcgttgagtcttcacggtgggatgaaaggtgc 18135869  T
Q  362 gtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
     || || ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18135870 ctgtaggcacgttagtactctgacgctcaagttagtaatggaactgagaaagagtgtgtaagaagtgttgtcaaaagtgatg 18135951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 333 - 437
Target Start/End: Original strand, 45714965 - 45715069
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    |||||||||| |||| ||||||||||||  ||||| ||| |||||||||  |||||||||||||||||| |||||||||||||||||||| |||||| ||    
T  45714965 atgagtcttcctggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtggt 45715064  T
Q  433 gaaaa 437  Q
    |||||    
T  45715065 gaaaa 45715069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 12168958 - 12169051
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgct-caagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||| ||||| ||||||| |||||  ||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  12168958 gaacgaaaggtgtctgcaggcacattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtga 12169051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 373 - 442
Target Start/End: Original strand, 18770324 - 18770393
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgat 442  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||    
T  18770324 ttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtgat 18770393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 443
Target Start/End: Complemental strand, 15390780 - 15390596
Alignment:
Q  259 ggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaagg 358  Q
    |||||||||||||||||||||||   | ||||||||| || ||||||||||||||| | | ||| | | | |  ||||||||||  | | |||||||||     
T  15390780 ggtgagaacggttgagtggcaacggtgccagagaatgctctagtgtgacggtaacggcttccggcacggcagcgatgagtcttcgcgatggaacgaaagc 15390681  T
Q  359 tgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||  |   | ||| |||||||| |||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||||||||||    
T  15390680 tgcctattggcacgttagcactttgacgctcaagtaagtgatggaactaataaacagtgtgtaagaagtgttgtgaaaagtgatg 15390596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 441
Target Start/End: Original strand, 20120281 - 20120425
Alignment:
Q  297 tccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcag 396  Q
    |||||||||||||||||| | ||||| | |  |||  | | |||||| ||| ||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  20120281 tccagtgtgacggtaacggctttcggcacgctggtgttaaatcttcacggtggaacgaaaggtgtctgcaggcacgttagcactccgactctcaagtcag 20120380  T
Q  397 taatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||| ||||||||||||||||||   ||||| ||||| ||||||    
T  20120381 taatgaaactgagaaagagtgtgtggaaagtggtgtgataagtga 20120425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 441
Target Start/End: Original strand, 29137787 - 29137979
Alignment:
Q  249 tgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggtt 348  Q
    |||||| | ||||||| |||||||||| |||||  || |||||||||||   |||||| ||||||| | | ||| | | ||   ||||||| ||  |||     
T  29137787 tgatatatccggtgagtacggttgagtagcaacggcgacagagaatgttttggtgtgatggtaacggcttccggcacggcgacgatgagtcatcgaggtg 29137886  T
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||| ||| |||||  || ||||||| | ||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||    
T  29137887 gaacgaaagatgtctgcaggtacgttagcacaccgacgctcaagtcattaatgcaactgagaaagagtgtgtaagaaatgttgtggaaagtga 29137979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 441
Target Start/End: Complemental strand, 10923361 - 10923178
Alignment:
Q  258 cggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaag 357  Q
    ||||||||| ||||||||||||||  |||||||||||| ||  |||||||||||| |   | ||| | |  ||| || |||||||  ||| |||||||||    
T  10923361 cggtgagaatggttgagtggcaactgcggcagagaatgctctggtgtgacggtaatggtctccggaacggtggtgattagtcttcgcggtggaacgaaag 10923262  T
Q  358 gtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||| || || ||| ||| ||||| ||| ||||||||||| |||||||| | ||||||||||||  ||||| ||||||||||||    
T  10923261 gtgtatgtaggcacgttatcactccgacactcaagtcagttatggaacttataaagagtgtgtagaaagtgctgtgaaaagtga 10923178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 24157387 - 24157321
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagt 439  Q
    |||||||||||||||||||||||||||||||||||||| | |  || ||||||||||||||||||||    
T  24157387 ttagcactctgacgctcaagtcagtaatggaactgagagataaagtctaagaagtgttgtgaaaagt 24157321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 441
Target Start/End: Complemental strand, 19919184 - 19919079
Alignment:
Q  336 agtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaa 435  Q
    ||||||| |||| ||||||||||||  |||||  ||||||| ||||| ||||  |||||| |||||||| ||||||||||| ||||  ||||||||||||    
T  19919184 agtcttcgtggtggaacgaaaggtgcctgcaggaacattagaactctaacgccaaagtcaataatggaaatgagaaagagtatgtagaaagtgttgtgaa 19919085  T
Q  436 aagtga 441  Q
    ||||||    
T  19919084 aagtga 19919079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 3586373 - 3586441
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||| |||| |||||||||||||||||||||||||||||| |||| |||  ||||||||||||||||||    
T  3586373 ttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtga 3586441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 24499799 - 24499867
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||  ||||||||||||||||||||| ||||||||||||||||  || |||||||||||||||    
T  24499799 ttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaagtga 24499867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 36267519 - 36267576
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||||||||| |||||||||||||||||||  ||| ||||||||||||||    
T  36267519 acgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtga 36267576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 441
Target Start/End: Complemental strand, 27846640 - 27846532
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||   |||| |||||| |||  ||||| ||| |||||||||  ||| ||||||||||||||||||||||||| ||| ||||  |||||||||    
T  27846640 atgagtcttcgcagttggacgaaaagtgcctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagaaacagtttgtagaaagtgttgt 27846541  T
Q  433 gaaaagtga 441  Q
    | |||||||    
T  27846540 gtaaagtga 27846532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 443
Target Start/End: Original strand, 29711004 - 29711096
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||| |||||||| ||||  ||| |||||||||  |||||||||||| |||||||| |||  ||||| ||||| |||||||||||||||||||||    
T  29711004 gaacaaaaggtgtatgcatgcacgttagcactccaacgctcaagtcactaatggaattga--aagagagtgtacgaagtgttgtgaaaagtgatg 29711096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 12127754 - 12127676
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||| ||| |||||||||  |||||||||||||||||| |||| |||| | |||||||  ||||||||||||||||||    
T  12127754 tgcaggcacgttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaaagtga 12127676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 441
Target Start/End: Original strand, 18772239 - 18772326
Alignment:
Q  350 aacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||| ||||| ||| |||||||||||| ||||||   ||||||||||||    |||||||||||  ||||||||||||||||||    
T  18772239 aacgaaaggtgtttgcaggcacgttagcactctgatgctcaaagtagtaatggaact----aagagtgtgtagaaagtgttgtgaaaagtga 18772326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 441
Target Start/End: Complemental strand, 45258273 - 45258165
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||  ||| ||||||||| ||| ||||| ||| ||| |||||  | |||||||| ||||||| |||| ||||||| |||||   |||||||||    
T  45258273 atgagtcttcgcggtggaacgaaagatgtctgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgt 45258174  T
Q  433 gaaaagtga 441  Q
    |||||||||    
T  45258173 gaaaagtga 45258165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 17671943 - 17671987
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagc 377  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||    
T  17671943 atgagtcttcatggtggaacgaaaggtgtctgcagacacgttagc 17671987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 429
Target Start/End: Original strand, 36022447 - 36022527
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 429  Q
    ||||||||||| | || || ||| ||| |||||| ||||||||||||||| ||  ||||||||||||| ||||| ||||||    
T  36022447 gaacgaaaggtatatgtaggcacgttaacactctaacgctcaagtcagtattgagactgagaaagagtttgtaaaaagtgt 36022527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 17626871 - 17626915
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagc 377  Q
    ||||||||| ||||| ||||||||||||| ||||||||| |||||    
T  17626871 atgagtctttatggtggaacgaaaggtgtctgcagacacgttagc 17626915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 30638565 - 30638617
Alignment:
Q  365 cagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtg 417  Q
    ||||||| ||| ||||  |||||||| ||||||||||||||| ||||||||||    
T  30638565 cagacacgttaacacttcgacgctcatgtcagtaatggaactaagaaagagtg 30638617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 259 - 441
Target Start/End: Original strand, 52565475 - 52565658
Alignment:
Q  259 ggtgagaacggttgagtggcaacaacggcagagaatgttcc-agtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaag 357  Q
    ||||||||||| ||| ||||||  || |||||||||| ||| |||||||||||||| || | |||||||  ||  |||||| ||| || | |||||||||    
T  52565475 ggtgagaacggatgaatggcaatgacagcagagaatgctccgagtgtgacggtaacaacttccggtatggtggcgatgagttttcgtgatggaacgaaag 52565574  T
Q  358 gtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||  ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| | |  ||||||||||||||||||    
T  52565575 gtgcctgcagacacgttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaagtga 52565658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 258 - 443
Target Start/End: Complemental strand, 16299769 - 16299585
Alignment:
Q  258 cggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaag 357  Q
    |||||||||| |||||||||||||| ||| |||||||| ||| |||| || |||||||| | || || | |||  |||||||||   ||| ||||||||     
T  16299769 cggtgagaacagttgagtggcaacagcggtagagaatgctccggtgttaccgtaacgacttccgatacggcggcgatgagtcttgc-ggtggaacgaaac 16299671  T
Q  358 gtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||| ||||  ||||||||||||| |||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  16299670 gtgtctgcatgcacattagcactccgacgttcaagtaagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatg 16299585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 348 - 443
Target Start/End: Complemental strand, 23728926 - 23728831
Alignment:
Q  348 tgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||||||||||||  ||||| ||| |||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  23728926 tgaacgaaaggtggatgcaggcacgttagcattatgacgctcaagtcattaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 23728831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 14255224 - 14255051
Alignment:
Q  260 gtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggt 359  Q
    |||||||||||||||| |||||  |||||||||||| ||| |||||||||||| | | | |||   | |||  |||||||||| |||| ||||||| |||    
T  14255224 gtgagaacggttgagtagcaacggcggcagagaatgctccggtgtgacggtaatggcttccggcgcggcggcgatgagtcttcgtggtggaacgaagggt 14255125  T
Q  360 gtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtg 433  Q
    |  ||||  |||  ||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  14255124 gcctgcaagcacgatagcactccaacgctcaagtcattaatgaaactgagaaagagtgtgtaagaagtgttgtg 14255051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 443
Target Start/End: Original strand, 25408086 - 25408176
Alignment:
Q  353 gaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||||||  ||||||||| |||||||||  | |||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  25408086 gaaaggtgcctgcagacacgttagcactccaatgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgatg 25408176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 441
Target Start/End: Complemental strand, 1659894 - 1659802
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||| | || |||| ||| |||||  |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  1659894 gaacgaaaggtgtctacatacacgttatcactccaacgctcaagtcaataatggatctgagaaagaatgtgtaagaagtgttgtgaaaagtga 1659802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 12177396 - 12177464
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  12177396 ttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 12177464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 22414761 - 22414853
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||   |||| ||| ||||||||||||||||||||||||||||| |||||| ||| ||||||||  ||||||||||||||||||    
T  22414761 gaacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttgtgaaaagtga 22414853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 436
Target Start/End: Complemental strand, 4601696 - 4601505
Alignment:
Q  245 atattgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcat 344  Q
    |||||||| |||  ||||||||||||||||| |||||   |||||| |||| ||  ||||||||||||     | ||| ||| |||  || |||||||      
T  4601696 atattgatctgtctggtgagaacggttgagtagcaacggtggcagaaaatgctctggtgtgacggtaattgtttccggcatggcggcgataagtcttcgc 4601597  T
Q  345 ggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaa 436  Q
    ||| ||||||||||||  ||||| ||| ||||||||| ||||||||||||||||||| |||||||||| | ||||||| ||||| |||||||    
T  4601596 ggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtcagtaatgaaactgagaaataatgtgtaataagtgctgtgaaa 4601505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 5671761 - 5671848
Alignment:
Q  354 aaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||| || || ||| |||||||||  |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  5671761 aaaggtgtttgtaggcacgttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 5671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 16030365 - 16030473
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||| ||| ||| ||||||||| ||||| ||| ||| || ||  | |||||||||||||||||||||||  |||||||||||  |||||||||    
T  16030365 atgagtcttcacggtggaatgaaaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgtgtagaaagtgttgt 16030464  T
Q  433 gaaaagtga 441  Q
    |||||||||    
T  16030465 gaaaagtga 16030473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 26977726 - 26977814
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaa 437  Q
    ||||||||||||  ||||| ||| |||||||||  |||||||||||||||||||||| |||||||||||||||  |||| |||||||||    
T  26977726 gaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaa 26977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 441
Target Start/End: Complemental strand, 33101608 - 33101520
Alignment:
Q  353 gaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||  ||||| ||| |||||||||  ||||||||||| ||||||||||||||||| ||||||||  ||||||||||||||||||    
T  33101608 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaagtga 33101520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 433
Target Start/End: Original strand, 48637537 - 48637621
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtg 433  Q
    ||||||||||||  ||||| ||| | |||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||    
T  48637537 gaacgaaaggtgcctgcaggcacgtcagcactctgacgctcaagtcagtaatggaactgaaagagaggatgtaagaagtgttgtg 48637621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 441
Target Start/End: Original strand, 16050384 - 16050472
Alignment:
Q  353 gaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||| | ||||| ||| |||||||||  |||||||||||| | |||||||||||||||||||||||  |||||| |||||||||||    
T  16050384 gaaaggtatctgcaggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtgtggtgaaaagtga 16050472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 441
Target Start/End: Complemental strand, 23280365 - 23280275
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||  ||||||||  ||| |||||  || ||||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  23280365 gaacgaaaggtgcctgcagacatgttatcactcaaactctcaagtcagtaatggaactgagaaagtgtgtgta--tagtgttgtgaaaagtga 23280275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 34273097 - 34273165
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||  | |||||||||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  34273097 ttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtga 34273165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 21098950 - 21098891
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactga 408  Q
    ||||||||||||  ||||| ||||||||||||| |||| |||||||||||||||||||||    
T  21098950 gaacgaaaggtggctgcaggcacattagcactccgacgatcaagtcagtaatggaactga 21098891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 2612768 - 2612695
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaa 422  Q
    ||||||||||||| ||||||||| |||| | |   ||||||||||||||| |||||||||| ||||||||||||    
T  2612768 gaacgaaaggtgtctgcagacacgttagtattgaaacgctcaagtcagtattggaactgaggaagagtgtgtaa 2612695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 410
Target Start/End: Original strand, 3590813 - 3590874
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgaga 410  Q
    ||||||||||||  ||||| ||| ||||||||| |||| |||||||||||||||||||||||    
T  3590813 gaacgaaaggtgcatgcaggcaccttagcactccgacgatcaagtcagtaatggaactgaga 3590874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 428
Target Start/End: Complemental strand, 43344543 - 43344469
Alignment:
Q  353 gaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtg 428  Q
    ||||||||| |||||| || |||||||||  ||||||||||||||| || |||| ||||||||||||||| |||||    
T  43344543 gaaaggtgtctgcagaaacgttagcactcgaacgctcaagtcagtattgaaact-agaaagagtgtgtaaaaagtg 43344469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 29217722 - 29217656
Alignment:
Q  249 tgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacga 315  Q
    |||||||| || ||||||| ||||| |||||||  |||||||||||| ||| |||||||||||||||    
T  29217722 tgatatgtccgatgagaacagttgaatggcaacggcggcagagaatgctccggtgtgacggtaacga 29217656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 441
Target Start/End: Complemental strand, 5459829 - 5459722
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    |||||||||| |||| | ||||||||||  |||||  || |||||||||  ||| ||||  |||||| ||| |||||||||||||||||  |||||||||    
T  5459829 atgagtcttcgtggtgggacgaaaggtgcatgcaggtacgttagcactccaacgttcaaaacagtaacgga-ctgagaaagagtgtgtagaaagtgttgt 5459731  T
Q  433 gaaaagtga 441  Q
    | |||||||    
T  5459730 gtaaagtga 5459722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 439
Target Start/End: Complemental strand, 21682660 - 21682605
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaa-agagtgtgtaagaagtgttgtgaaaagt 439  Q
    ||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||    
T  21682660 acgctcaagtcagtaatggaact-agaagagagtgtgtaagaaatattgtgaaaagt 21682605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 2141065 - 2140998
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaat 400  Q
    |||| |||||| ||| ||||||||||||| ||||| ||  |||||||||  |||||||||||||||||    
T  2141065 atgaatcttcacggtagaacgaaaggtgtatgcaggcaacttagcactccaacgctcaagtcagtaat 2140998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 249 - 443
Target Start/End: Complemental strand, 15742358 - 15742164
Alignment:
Q  249 tgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggtt 348  Q
    |||||||| |||||| || ||||||||||||||  ||| | |||||| ||| ||||||||||||||   |  |  | | ||   |||||||||| ||||     
T  15742358 tgatatgtccggtgaaaaaggttgagtggcaacggcggtatagaatgctccggtgtgacggtaacggtttctgacacggcgacgatgagtcttcgtggtg 15742259  T
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    || |||||||||  ||| | ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15742258 gagcgaaaggtgcctgctggcacgttagcactcttacgctcaagtcagtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtgatg 15742164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 349 - 443
Target Start/End: Original strand, 5518526 - 5518620
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||||||||||| |||||||||| ||||||||   ||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||    
T  5518526 gaacgaaaggtgagtgcagacacgttagcacttcaacgctcaagtcagtaattgaactgagagagaatgtgtaagaagtgttgtggaaagtgatg 5518620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 441
Target Start/End: Original strand, 12683672 - 12683863
Alignment:
Q  249 tgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggtt 348  Q
    |||||||| ||||||| | || ||||||||||    ||| || ||||||||||||||||||| |||   ||| ||| ||||   |||||||||   |||     
T  12683672 tgatatgtccggtgaggatggatgagtggcaaaggtggcggataatgttccagtgtgacggtgacggt-ttccgtacgacgacgatgagtctttgcggtg 12683770  T
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||  ||||| ||| |||||||||  |||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||    
T  12683771 gaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 12683863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 47253287 - 47253355
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47253287 ttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtga 47253355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 15514642 - 15514572
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  15514642 ttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagtgatg 15514572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 349 - 440
Target Start/End: Complemental strand, 14602120 - 14602029
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    ||||||||| ||| ||||| ||| |||||| ||  |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  14602120 gaacgaaagttgtctgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 14602029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 19809672 - 19809779
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||  |||||| ||||||||   ||||||||  |||||||||  |||||||||||||||||| |||| ||||||||||||||  |||||||||    
T  19809672 atgagtcttcgcggttga-cgaaaggttcctgcagacatgttagcactccaacgctcaagtcagtaatgaaactaagaaagagtgtgtagaaagtgttgt 19809770  T
Q  433 gaaaagtga 441  Q
    |||||||||    
T  19809771 gaaaagtga 19809779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 29157088 - 29157180
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||  ||||||||| || ||||||  |||||||||| |||||||||||||||||| ||||||||  |||||||||| |||||||    
T  29157088 gaacgaaaggtgcatgcagacacgtttgcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtga 29157180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 442
Target Start/End: Complemental strand, 16012562 - 16012483
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgat 442  Q
    ||||| ||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||||    
T  16012562 tgcaggcacgttaacactccgacgctcaagtcagtaatggaactgagatagagtgtgtaagaagcattgtgagaagtgat 16012483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 349 - 440
Target Start/End: Complemental strand, 1638422 - 1638332
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    ||||||||||||| ||||| ||| ||||||||| |||| ||||||||||||||||||||||| |||  || |||||||||||  ||||||||    
T  1638422 gaacgaaaggtgtttgcag-cactttagcactccgacgatcaagtcagtaatggaactgagagagaaagtctaagaagtgttaagaaaagtg 1638332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 19643722 - 19643780
Alignment:
Q  383 gacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||    
T  19643722 gacgcttaagtcagtaatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtga 19643780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 14003145 - 14003081
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaa 437  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||   ||||||| ||||||    
T  14003145 ttagcactatgacgctcaagtcagtaatggaactgagaaagagtttgtggaaagtgttatgaaaa 14003081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 418
Target Start/End: Original strand, 13171065 - 13171134
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgt 418  Q
    ||||||||||||  ||||| ||| |||||||||  || ||||||||||||||||||||||| ||||||||    
T  13171065 gaacgaaaggtgcttgcaggcacgttagcactccaactctcaagtcagtaatggaactgagcaagagtgt 13171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 25066154 - 25066221
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    |||||||||||||| ||||||||||||||||||| ||| |||   | ||||| |||||||||||||||    
T  25066154 ttagcactctgacgatcaagtcagtaatggaactaagagagaaaatctaagacgtgttgtgaaaagtg 25066221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 10981890 - 10981932
Alignment:
Q  387 ctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 429  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  10981890 ctcaagtcagtaatggaaccgagaaagagtgtgtaaaaagtgt 10981932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 417
Target Start/End: Original strand, 3981920 - 3982002
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtg 417  Q
    ||||||||||| ||| ||||||||||||  ||||  ||| |||||||||  || ||||||||  |||||||||||| ||||||||    
T  3981920 atgagtcttcacggtggaacgaaaggtgcatgcatgcacgttagcactccaacactcaagtc--taatggaactgaaaaagagtg 3982002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 441
Target Start/End: Complemental strand, 2674672 - 2674587
Alignment:
Q  352 cgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||| ||||| ||  |||||||||  |||| ||||||| ||||| ||||||||    |||||||  ||||||||||||||||||    
T  2674672 cgaaaggtgtatgcagtcatgttagcactccaacgcacaagtcaataatgtaactgaga----gtgtgtagaaagtgttgtgaaaagtga 2674587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 324 - 256
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  324 ttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 443
Target Start/End: Original strand, 22865653 - 22865841
Alignment:
Q  255 gttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacga 354  Q
    |||||||||||||  |||||| |||||  |||||||||||| ||| |||||||||||||| | ||||| | |  ||  |   ||||||   || ||||||    
T  22865653 gttcggtgagaacaattgagtagcaacggcggcagagaatgctccggtgtgacggtaacggctttcggcacggtggcgacatgtcttcgcagtggaacga 22865752  T
Q  355 aaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||||  |||||  || |||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||    
T  22865753 aaggtgcatgcaggtacgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaaagtgatg 22865841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 256 - 443
Target Start/End: Original strand, 24647182 - 24647368
Alignment:
Q  256 ttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaa 355  Q
    |||||||||||||||||||| ||||||  | ||||||||||||   ||||||||||||||| | | | | || ||| |||| ||||||   | |||||||    
T  24647182 ttcggtgagaacggttgagtagcaacagtgacagagaatgttctgatgtgacggtaacgacttccagcacgatggtaatgaatcttcact-tggaacgaa 24647280  T
Q  356 aggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
     ||||  | || |||| ||| |||||  |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24647281 gggtgcatacatacactttaacactccaacgctcaattcagtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatg 24647368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 443
Target Start/End: Complemental strand, 25829183 - 25828999
Alignment:
Q  259 ggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaagg 358  Q
    |||||||||| |||| | ||||||  ||||||||||  || || ||||||||||| || ||||| | |  ||  || |||||||  |||||||| ||| |    
T  25829183 ggtgagaacgattgattagcaacagtggcagagaatactctagggtgacggtaactactttcggcacggtggcgataagtcttcgcggttgaacaaaatg 25829084  T
Q  359 tgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||| | ||| ||| |||||| |||||||||| ||||| |||||||| ||||||| |||||||||||||| |||||||||||||||    
T  25829083 tgtattcaggcacgttagcaatctgacgctctagtcaataatggaattgagaaaaagtgtgtaagaagtattgtgaaaagtgatg 25828999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 443
Target Start/End: Original strand, 25537287 - 25537485
Alignment:
Q  245 atattgatatgttcggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcat 344  Q
    |||||||||||| |  ||||||||||||| |||||||  ||| |||||||| ||  ||||||||||||||   |  || | | |||  | ||||||||      
T  25537287 atattgatatgtccaatgagaacggttgaatggcaacggcggaagagaatgctctggtgtgacggtaacggtttctggcacggcggcgaagagtcttcgc 25537386  T
Q  345 ggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||| ||||||||||||  ||||  ||| |||||||||  |||||||||   ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  25537387 ggtggaacgaaaggtgcctgcaagcacgttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatgaagtgttgtgaaaagtgatg 25537485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 26994706 - 26994619
Alignment:
Q  354 aaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||| | ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| ||  | ||||||||||||||||    
T  26994706 aaaggtgtcttcagacacgttagcactccgacgctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtga 26994619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 22903114 - 22903171
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  22903114 acgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 22903171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 19846055 - 19846125
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtg 419  Q
    ||||||||||||  |||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||    
T  19846055 gaacgaaaggtgcctgcagacacattagcactctaacactcaagtcagtattggaactaagaaagagtgtg 19846125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 441
Target Start/End: Complemental strand, 27083356 - 27083251
Alignment:
Q  335 gagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtga 434  Q
    ||||||||  ||| |||||||| |||| ||||||||| |||||||||  || ||||||||||||| | ||||| |||||||||||||  |||||||||||    
T  27083356 gagtcttcgcggtagaacgaaatgtgtctgcagacacgttagcactccaacactcaagtcagtaa-gaaactgtgaaagagtgtgtagaaagtgttgtga 27083258  T
Q  435 aaagtga 441  Q
    |||||||    
T  27083257 aaagtga 27083251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 436
Target Start/End: Original strand, 24546318 - 24546415
Alignment:
Q  334 tgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtg 433  Q
    |||||||||||||| ||||||||||||| ||||| ||| |||| ||||  ||||| ||||||||||||||| ||    ||||||| ||||||||||||||    
T  24546318 tgagtcttcatggtggaacgaaaggtgtctgcaggcacgttagaactc-cacgctaaagtcagtaatggaattg----agagtgtataagaagtgttgtg 24546412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 433
Target Start/End: Complemental strand, 26348184 - 26348100
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtg 433  Q
    ||||||||||||| ||||| ||| |||||||||  |||||||||||| |||||||||| | | |||  |||||||||||||||||    
T  26348184 gaacgaaaggtgtctgcaggcacgttagcactccaacgctcaagtcattaatggaactaaaagagatagtgtaagaagtgttgtg 26348100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 437
Target Start/End: Complemental strand, 19993256 - 19993182
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaa 437  Q
    |||||||||||||||| ||  |  ||||||||||||||||||||||||||||| ||||   ||||||||||||||    
T  19993256 tgcagacacattagcagtccaatactcaagtcagtaatggaactgagaaagagcgtgttgaaagtgttgtgaaaa 19993182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 441
Target Start/End: Original strand, 25333735 - 25333813
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||| || ||||| |||| ||||||||||||||||||| |||| ||| ||||||||||  ||||||||| ||||||||    
T  25333735 tgcaggcatattagtactccgacgctcaagtcagtaatgtaactaagagagagtgtgtagaaagtgttgttaaaagtga 25333813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 429
Target Start/End: Original strand, 8938898 - 8938978
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 429  Q
    ||||||||||||  ||||| ||| ||| |||||  | |||| |||||||| ||||||||||||||||||||||| ||||||    
T  8938898 gaacgaaaggtgcatgcaggcacgttaacactccaatgctctagtcagtattggaactgagaaagagtgtgtaaaaagtgt 8938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 20025253 - 20025361
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||  ||| | ||||||||||| |||| |||| ||| |||||  |||||   ||||| |||| |||||||||||||||||||  |||||||||    
T  20025253 atgagtcttcgcggtgggacgaaaggtgtctgcacacacgttaacactccaacgctactgtcaggaatgaaactgagaaagagtgtgtagaaagtgttgt 20025352  T
Q  433 gaaaagtga 441  Q
    | |||||||    
T  20025353 gtaaagtga 20025361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 32418563 - 32418499
Alignment:
Q  377 cactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||||||||| | ||||||| |||||||||||||||   ||||||||||| |||||    
T  32418563 cactctgacgctcaagtcactgatggaacagagaaagagtgtgtagagagtgttgtgaagagtga 32418499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 419
Target Start/End: Original strand, 16621178 - 16621264
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtg 419  Q
    ||||||||||| ||| ||||||||||||| || || ||| ||| ||||   ||||||||| || || ||||||||||||||||||||    
T  16621178 atgagtcttcacggtggaacgaaaggtgtatgtaggcacgttaacacttcaacgctcaagccaatattggaactgagaaagagtgtg 16621264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 26163621 - 26163691
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtg 419  Q
    ||||||||||||  ||||  |||||||||||||  ||||||||||||| |||| |||| ||||||||||||    
T  26163621 gaacgaaaggtgcatgcatgcacattagcactccaacgctcaagtcagaaatgaaactaagaaagagtgtg 26163691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 18799780 - 18799827
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgaga 410  Q
    ||||| ||| ||||||||| |||| |||||||||||||||||||||||    
T  18799780 tgcagtcacgttagcactccgacgatcaagtcagtaatggaactgaga 18799827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 22874 - 22964
Alignment:
Q  351 acgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||  ||| | ||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  22874 acgaaaggtgcctgcgggcacgttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtga 22964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 443
Target Start/End: Complemental strand, 11111 - 10926
Alignment:
Q  258 cggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaag 357  Q
    |||||||||||||||||| |||||   |||| |||||| |||  || | |||||||||| | ||||| | |||  |||| |||    ||| |||| ||||    
T  11111 cggtgagaacggttgagtcgcaacggtggcaaagaatgctccgatgagtcggtaacgacttccggtacggcggcgatgaatctctgcggtggaacaaaag 11012  T
Q  358 gtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||| ||||| ||| |||||||||  |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||    
T  11011 gtgtatgcaggcacgttagcactccaacgctcaagtcaataatggaactgaaagagagtgtgtaagaagtgttgtgaaaagtgatg 10926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 349 - 439
Target Start/End: Complemental strand, 24576688 - 24576598
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagt 439  Q
    ||||||||||||  ||||| ||| ||| |||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||    
T  24576688 gaacgaaaggtgcctgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaaaatgagtgtgtaagaagtgttgtgaaaagt 24576598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 258 - 439
Target Start/End: Complemental strand, 3459679 - 3459498
Alignment:
Q  258 cggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaag 357  Q
    ||||||||||||  |||| |||||  |||||||||||| || ||||||| ||||||    |||  |||| |||| ||||||||||  ||| |  ||||||    
T  3459679 cggtgagaacggccgagtagcaacggcggcagagaatgctctagtgtgatggtaacagttttcaatatggcggtaatgagtcttcgcggtggg-cgaaag 3459581  T
Q  358 gtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgtt-gtgaaaagt 439  Q
    |||  ||||| ||| ||||||||| | ||||||||||||||||||||||||| |||||||||||  ||||||| |||||||||    
T  3459580 gtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgttggtgaaaagt 3459498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 21416748 - 21416812
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaa 437  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||    
T  21416748 ttagcactccgacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaa 21416812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 6928157 - 6928103
Alignment:
Q  387 ctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6928157 ctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 6928103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 441
Target Start/End: Complemental strand, 26917017 - 26916911
Alignment:
Q  335 gagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtga 434  Q
    |||||||| || | ||||||||||||  |  || ||| ||||| | || ||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  26917017 gagtcttcgtgatggaacgaaaggtgcatttaggcacgttagcgcactaacgctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtga 26916918  T
Q  435 aaagtga 441  Q
    |||||||    
T  26916917 aaagtga 26916911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 30477629 - 30477719
Alignment:
Q  351 acgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||| ||| ||||  ||| |||||||||  |||||||||||||||| | |||||||||||||||||||  ||||||||||||||||||    
T  30477629 acgaaagatgtctgcatgcacgttagcactccaacgctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 30477719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 441
Target Start/End: Original strand, 18322898 - 18323021
Alignment:
Q  318 ttcggtatgacggtcatgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtg 417  Q
    ||||||| | |||| | ||||||||  ||| |||| |||||||  ||||||||  ||| |||||  ||||||||||||||||| ||||||||||||| ||    
T  18322898 ttcggtacggcggtgacgagtcttcgcggtggaacaaaaggtgcatgcagacatgttaacactccaacgctcaagtcagtaatagaactgagaaagattg 18322997  T
Q  418 tgtaagaagtgttgtgaaaagtga 441  Q
    ||||  || |||||||||||||||    
T  18322998 tgtagaaaatgttgtgaaaagtga 18323021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 442
Target Start/End: Complemental strand, 11776429 - 11776255
Alignment:
Q  260 gtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggt 359  Q
    |||||||||||||| |||||||  |||||||||||| ||  ||||||| ||||| |  ||||| | |||||  |||||| ||   ||| | ||||||| |    
T  11776429 gtgagaacggttgaatggcaacggcggcagagaatgctctggtgtgacagtaactattttcggcacgacggagatgagtatttgcggtgggacgaaagat 11776330  T
Q  360 gtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgat 442  Q
    || ||||| ||| ||||||||| |||||||||        ||||||||||||||||||| |||| ||||||| ||||||||||    
T  11776329 gtttgcaggcacgttagcactccgacgctcaa--------tggaactgagaaagagtgtttaaggagtgttgggaaaagtgat 11776255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 441
Target Start/End: Original strand, 24507387 - 24507535
Alignment:
Q  292 aatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaa 391  Q
    |||| |||||||||||||| |||   ||||||| | |||| |||||||||   ||| || |||||||||| ||||  ||| |||| ||||  ||| ||||    
T  24507387 aatgctccagtgtgacggtgacggt-ttcggtacggcggtaatgagtctttgcggtggagcgaaaggtgtctgcatgcacgttagtactccaacgatcaa 24507485  T
Q  392 gtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||| |||||||| ||||||||||||| ||  ||||||||||||||||||    
T  24507486 gtcaataatggaaatgagaaagagtgtctagaaagtgttgtgaaaagtga 24507535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 13754780 - 13754836
Alignment:
Q  385 cgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||||||| |||||||||||||||||||  |||||||||| |||||||    
T  13754780 cgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtga 13754836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 17698350 - 17698298
Alignment:
Q  389 caagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  17698350 caagtcagtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtga 17698298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 416
Target Start/End: Complemental strand, 17319743 - 17319657
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacatt---agcactctgacgctcaagtcagtaatggaactgagaaagagt 416  Q
    |||||||||| |||| ||||||||||||  ||||| ||  ||   |||||||||| | |||||||||||||||||||||||||||||    
T  17319743 atgagtcttcgtggtggaacgaaaggtgcatgcaggcatgttagcagcactctgatgttcaagtcagtaatggaactgagaaagagt 17319657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 1909813 - 1909742
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgt 420  Q
    ||||||||||||  ||||||||| |||||| |   ||||| |||||||||||| ||||||||||||||||||    
T  1909813 gaacgaaaggtgcatgcagacacgttagcatttcaacgctaaagtcagtaatgaaactgagaaagagtgtgt 1909742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 440
Target Start/End: Complemental strand, 4565498 - 4565407
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    ||||||||||||| ||||| ||  ||||||||| |||  |||||| ||||||| |||||| | |||  || |||||||||||||||||||||    
T  4565498 gaacgaaaggtgtctgcaggcatgttagcactccgacaatcaagttagtaatgaaactgaaagagaaagtataagaagtgttgtgaaaagtg 4565407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 24070879 - 24070930
Alignment:
Q  390 aagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||| ||||||    
T  24070879 aagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgagaagtga 24070930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 13764977 - 13765067
Alignment:
Q  351 acgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||| ||||| ||| |||  ||||  | | |||||| ||||||| |||||||||||||||||||  |||||||||| |||||||    
T  13764977 acgaaaggtgtctgcaggcacgttaagactccaatgttcaagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtga 13765067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 24677668 - 24677598
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||||||||  | ||||||||||||| ||||||||||| |||  ||||||||||||||||| |||| ||||    
T  24677668 ttagcactccaatgctcaagtcagtattggaactgagagagaaagtgtaagaagtgttgtggaaagggatg 24677598  T

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Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 5859815 - 5859872
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgt 420  Q
    ||||||||| |||||||||  |||||||||||| |||||||||| ||||| |||||||    
T  5859815 tgcagacacgttagcactccaacgctcaagtcaataatggaactaagaaatagtgtgt 5859872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 23243819 - 23243864
Alignment:
Q  398 aatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||    
T  23243819 aatggaactgaaagatagtgtgtaagaagtgttgtgaaaagtgatg 23243864  T

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Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 23269232 - 23269304
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgta 421  Q
    ||||||||||||| | ||| ||  |||||||||  || || ||||||||||||||||||| ||||||||||||    
T  23269232 gaacgaaaggtgtctacaggcaagttagcactccaacacttaagtcagtaatggaactgataaagagtgtgta 23269304  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 441
Target Start/End: Complemental strand, 17927807 - 17927717
Alignment:
Q  351 acgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||||  ||||  ||| |||||||||  ||||| |||||||||||||||||||||  |||| ||||  ||||||| ||||| ||||    
T  17927807 acgaaaggtgcatgcatgcacgttagcactccaacgcttaagtcagtaatggaactgagattgagtatgtagaaagtgttatgaaaggtga 17927717  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 437
Target Start/End: Original strand, 15058005 - 15058109
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    |||||||||  |||| ||||||||||||  ||||| ||| ||||||||   |||| ||||| ||||||| || ||||||| | ||||||  |||||| ||    
T  15058005 atgagtctttgtggtggaacgaaaggtgcatgcaggcacgttagcactacaacgcacaagttagtaatgaaattgagaaaaaatgtgtagaaagtgtggt 15058104  T
Q  433 gaaaa 437  Q
    |||||    
T  15058105 gaaaa 15058109  T

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Target: scaffold0380 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 443
Target Start/End: Complemental strand, 6981 - 6871
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    |||||||||| |||| ||||||||| ||   | || ||| ||||  |||||||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  6981 atgagtcttcgtggtggaacgaaagatgctggtaggcacgttaggtctctgacgctcaagtcagtattgaaactgagaacgagtgtgtaagaagtgttgt 6882  T
Q  433 gaaaagtgatg 443  Q
    |||||||||||    
T  6881 gaaaagtgatg 6871  T

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Target: scaffold0505 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 7855 - 7963
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||| ||| ||| ||||||||  || || ||| |||||||||| |||||||| ||||||||| || ||||||||||||||||  |||||||||    
T  7855 atgagtcttcacggtggaaggaaaggtgcatgtaggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtagaaagtgttgt 7954  T
Q  433 gaaaagtga 441  Q
    |||||||||    
T  7955 gaaaagtga 7963  T

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Target: scaffold0140 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 6284 - 6376
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||| |||||||| ||||| ||| ||||||||  || ||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  6284 gaacaaaaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtga 6376  T

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Target: scaffold0005 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 349 - 440
Target Start/End: Original strand, 215258 - 215349
Alignment:
Q  349 gaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtg 440  Q
    ||||||||| ||| ||||| ||| |||||| ||  |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  215258 gaacgaaagttgtctgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 215349  T

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Target: scaffold0074 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 437
Target Start/End: Original strand, 35151 - 35327
Alignment:
Q  261 tgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaaggtg 360  Q
    ||||||||| |||| |||||||  || ||| || | ||| |||||| ||||||| | | ||||| | |||   ||||||||| | ||  ||||||| |||    
T  35151 tgagaacggatgagaggcaacagtggtagataaagctccggtgtgatggtaacggcttccggtacggcggcgttgagtcttcgtagtgcaacgaaatgtg 35250  T
Q  361 tgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaa 437  Q
      ||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||||||   ||||||||||||||    
T  35251 cttgcaggcacgttagcactctgacactcaagtcagtaacggaactgagaaagagtgtgtggaaagtgttgtgaaaa 35327  T

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Target: scaffold0464 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 443
Target Start/End: Original strand, 11411 - 11593
Alignment:
Q  258 cggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaacgacgttcggtatgacggtcatgagtcttcatggttgaacgaaag 357  Q
    |||||||||||||||||| |||||| |||||||||||||| | |||||||||||| | | |  || | | |||  | ||||||||| ||| ||||||| |    
T  11411 cggtgagaacggttgagtagcaacagcggcagagaatgtttctgtgtgacggtaaaggcttctggcacggcggcgaagagtcttcaaggtggaacgaatg 11510  T
Q  358 gtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||  | ||  ||  |||||||||  |||||||  ||| ||||||||||||||||||||||   | ||||||||||||||||||||    
T  11511 gtgcctacaaccatgttagcactccaacgctcacctcattaatggaactgagaaagagtgt---ataagtgttgtgaaaagtgatg 11593  T

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Target: scaffold0263 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 20578 - 20508
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||  || |||| ||||||||||||    
T  20578 ttagcactctgacgctcaagtcactaaaggaactgagaaagagtgtgtagaaaatgttatgaaaagtgatg 20508  T

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Target: scaffold0291 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 441
Target Start/End: Complemental strand, 15516 - 15443
Alignment:
Q  368 acacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||| | ||  ||||||||||||||||||    
T  15516 acacgttagcactccgacgctccagtcagtaatggaactgagaaagagtatctagaaagtgttgtgaaaagtga 15443  T

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Target: scaffold0291; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 8676 - 8590
Alignment:
Q  354 aaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||| ||||| ||| ||||||||  ||||||||||||||||||| |||||| ||| ||||||||  ||||||||||||||||||    
T  8676 aaaggtgtttgcag-cacgttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaagtgttgtgaaaagtga 8590  T

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Target: scaffold0103 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 344 - 443
Target Start/End: Original strand, 40777 - 40876
Alignment:
Q  344 tggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||| |||||||||| |  ||||| ||| |||||||||  |||||||||||||| |||||||||| | |||| ||||| |||||||| ||||||||||||    
T  40777 tggtagaacgaaaggcgcatgcaggcacgttagcactccaacgctcaagtcagtgatggaactgaaagagagagtgtaggaagtgttatgaaaagtgatg 40876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 416
Target Start/End: Complemental strand, 10839 - 10756
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagt 416  Q
    |||||||||| |||| ||| ||||||||| || || ||  ||||||||| |||| |||||||||||||||||||||||||||||    
T  10839 atgagtcttcgtggtggaatgaaaggtgtctgtaggcatgttagcactccgacgttcaagtcagtaatggaactgagaaagagt 10756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 344 - 443
Target Start/End: Complemental strand, 4534 - 4435
Alignment:
Q  344 tggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||| ||||||||||||| ||||  ||| |||||||||  |||||||||||| ||||| |||||| | |||| |||||||||||||| |||||| |||||    
T  4534 tggtggaacgaaaggtgtctgcaagcacgttagcactccaacgctcaagtcactaatgaaactgaaagagagagtgtaagaagtgttatgaaaaatgatg 4435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 95880 - 95823
Alignment:
Q  384 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||| ||||||||||||||||||||||| |||  ||||||||||||||||||    
T  95880 acgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtga 95823  T

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Target: scaffold0360 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 13945 - 14000
Alignment:
Q  386 gctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||||| ||||||    
T  13945 gctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtga 14000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 68891 - 68815
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    ||||||||| |||||||||  |||||||||| ||||||||||||||||||||  || ||  ||||||||||||||||||    
T  68891 tgcagacacgttagcactccaacgctcaagttagtaatggaactgagaaaga--gtatagaaagtgttgtgaaaagtga 68815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 4935 - 4989
Alignment:
Q  258 cggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaa 312  Q
    |||||||||||||||||| |||||  |||||||||||||||| ||||||| ||||    
T  4935 cggtgagaacggttgagtagcaacggcggcagagaatgttccggtgtgacagtaa 4989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 441
Target Start/End: Original strand, 5078 - 5116
Alignment:
Q  403 aactgagaaagagtgtgtaagaagtgttgtgaaaagtga 441  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  5078 aactgagaaaggttgtgtaagaagtgttgtgaaaagtga 5116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 21699 - 21629
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatg 443  Q
    |||||||||  || |||||||||||| || |||||| | ||||||| |||||||||||||| |||||||||    
T  21699 ttagcactccaacactcaagtcagtattgaaactgaaagagagtgtttaagaagtgttgtggaaagtgatg 21629  T

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Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 73883 - 73817
Alignment:
Q  373 ttagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagt 439  Q
    ||||||||||||||||||| | |||||||||  ||| |||||||| |||  ||||||||||||||||    
T  73883 ttagcactctgacgctcaaattagtaatggatttgaaaaagagtgcgtagaaagtgttgtgaaaagt 73817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 4279 - 4333
Alignment:
Q  259 ggtgagaacggttgagtggcaacaacggcagagaatgttccagtgtgacggtaac 313  Q
    ||||||||||||||||||||||  || | |||||||| ||| |||||||||||||    
T  4279 ggtgagaacggttgagtggcaatgacagaagagaatgctccggtgtgacggtaac 4333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 42236 - 42294
Alignment:
Q  350 aacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactga 408  Q
    |||||||||||  ||||| ||||||||||||  |||| |||||||| ||||||||||||    
T  42236 aacgaaaggtggctgcaggcacattagcacttcgacgatcaagtcaataatggaactga 42294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 437
Target Start/End: Original strand, 8970 - 9048
Alignment:
Q  363 tgcagacacattagcactctgacgctcaagtcagtaatggaactg----agaaagagtgtgtaagaagtgttgtgaaaa 437  Q
    ||||||||| |||||||||  ||||||||||  ||||||||||||    | ||| ||| ||||||||||||||||||||    
T  8970 tgcagacacgttagcactccaacgctcaagtatgtaatggaactggacaaaaaaaagtttgtaagaagtgttgtgaaaa 9048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 441
Target Start/End: Complemental strand, 29397 - 29291
Alignment:
Q  333 atgagtcttcatggttgaacgaaaggtgtgtgcagacacattagcactctgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgt 432  Q
    ||||||||||  ||| ||||||||||||  || || ||  |||||||||  |||||||||||||||||| || | || ||||  |||||  |||||||||    
T  29397 atgagtcttcgcggtggaacgaaaggtgcatggagtcatgttagcactccaacgctcaagtcagtaatgaaaataaggaaga--gtgtagaaagtgttgt 29300  T
Q  433 gaaaagtga 441  Q
    |||||||||    
T  29299 gaaaagtga 29291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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