View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8528_low_1 (Length: 755)
Name: NF8528_low_1
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8528_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 666; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 2 - 740
Target Start/End: Original strand, 38627993 - 38628729
Alignment:
| Q |
2 |
tccattgatgtggccctacatgatacggccctgcacacggtatgatgacaactatgtgctttaacacacaaaagtcggcatatttgttaaatataaaagc |
101 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38627993 |
tccattgatgtggccctacatgatacggacctgcacacggtatgatgacaactatgtgctttaacacacaaaagtcggcatatttgttaaatataaaagc |
38628092 |
T |
|
| Q |
102 |
agaacaacctggtaatcataagccactatgtttcttgtaagaatgtttgtgtgacgaagtaggtgtttagcagccaatattctatgtccatctaattata |
201 |
Q |
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| T |
38628093 |
agaacgacctggtaatcataagccactatgtttcttgtaagaatttttgtgtgacgaagtaggtgtttagcagcaaatattctatgtccatctaattata |
38628192 |
T |
|
| Q |
202 |
aacataggcatagcatccagactgagcaagaagaagtgttcaaaagtagattacttcaagttttatttaacattgaaggctacagccaaacacgttttc- |
300 |
Q |
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| T |
38628193 |
agcataggcatagcatccagactgagcaagaagaattgttcaaaagtagattacttcaagttttgtttaacattgaaggctacagccaaacacgtttttg |
38628292 |
T |
|
| Q |
301 |
tttccaaagtaagacctactctcacctcctccccttcatatattttccaacctatatatatactcatgatgaggcatatattcttcacctcaaccttaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38628293 |
tttccaaagtaagacctactctcacctcctccccttcatatattttccaacctatatatatactcatga---ggcatatattcttcacctcaaccttaat |
38628389 |
T |
|
| Q |
401 |
tagtatccaacagcatatatacatacttgcataccattcgcttccttttctgctcacactactaaacagactaatactgaaaaatagagcatatcctaca |
500 |
Q |
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| T |
38628390 |
tagtatccaacagcatatatacatacttgcataccattcgcttccttttctgttcacactactaaacagactaatactgaaaaatagagcatatcctaca |
38628489 |
T |
|
| Q |
501 |
aattaaaaatggttagaatgcattcaatactctctatagctaccttggttatagttattctctcagtttcaacaacattggcatcatcaacatctttgaa |
600 |
Q |
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| T |
38628490 |
aattaaaaatggttagaatgcattcaatactctctatagctaccttggttatagttattctctcagtttcaacaacattggcatcatcgacatctttgaa |
38628589 |
T |
|
| Q |
601 |
gtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttg |
700 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628590 |
gtatggtttctacaagacaacatgttcatccgtagaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttg |
38628689 |
T |
|
| Q |
701 |
attagaatgcattttcatgattgctttgtcagaggatgtg |
740 |
Q |
| |
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| T |
38628690 |
attagaatgcattttcatgattgctttgtcagaggatgtg |
38628729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 484 - 740
Target Start/End: Complemental strand, 38697808 - 38697552
Alignment:
| Q |
484 |
atagagcatatcctacaaattaaaaatggttagaatgcattcaatactctctatagctaccttggttatagttattctctcagtttcaacaacattggca |
583 |
Q |
| |
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||||||||||| ||| || ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697808 |
atagagcatatactataagctaacaatggttaaaatgcatgcaatactctctatagctaccttggttatagttattctctcagtttcaacaacattggca |
38697709 |
T |
|
| Q |
584 |
tcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccg |
683 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697708 |
tcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccg |
38697609 |
T |
|
| Q |
684 |
gcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtg |
740 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697608 |
gcatcactgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtg |
38697552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 621 - 729
Target Start/End: Original strand, 14256293 - 14256401
Alignment:
| Q |
621 |
catgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttgattagaatgcattttcatga |
720 |
Q |
| |
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|||||||||| || |||||||| || ||||| || | ||||||||||||||||||| || || || | |||||| ||||||||||||||||||||||| |
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| T |
14256293 |
catgtccatctgctgaggcaatagtgagaagtgcaattgacaaagctgtttcactcaatcctggtataggtgctggattgattagaatgcattttcatga |
14256392 |
T |
|
| Q |
721 |
ttgctttgt |
729 |
Q |
| |
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||||||||| |
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| T |
14256393 |
ttgctttgt |
14256401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 230 - 439
Target Start/End: Complemental strand, 38698112 - 38697894
Alignment:
| Q |
230 |
agaagaagtgttcaaaagtagattacttcaagttttatttaacattgaaggctacagccaaacacg-ttttctttccaaagtaagacctactctcacctc |
328 |
Q |
| |
|
|||||||| |||||||||| |||| |||||| || | | ||| |||||||||| |||||||||||| |||| ||| |||||||| ||||||||||| ||| |
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| T |
38698112 |
agaagaagagttcaaaagtggattgcttcaacttctgtctaaaattgaaggctgcagccaaacacgtttttgtttacaaagtaatacctactctcatctc |
38698013 |
T |
|
| Q |
329 |
ctccccttc------atatattttccaacctatatatat--actcatga---tgaggcatatattcttcacctcaaccttaattagtatccaacagcata |
417 |
Q |
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|||||||| ||||||| ||||||||||||||| ||| |||| |||||| ||| ||| |||||||||||||||| ||||||||| || |
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| T |
38698012 |
ttccccttcaccataatatattccccaacctatatatatacactaatgaggcagaggcagata-tctccacctcaaccttaattcatatccaacaacaac |
38697914 |
T |
|
| Q |
418 |
tatacatacttgcataccattc |
439 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
38697913 |
tat--atacttgcataccattc |
38697894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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