View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8528_low_11 (Length: 444)
Name: NF8528_low_11
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8528_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 36450476 - 36450923
Alignment:
| Q |
1 |
ttgtacagaacataaaccattttccaacatttggaaagaagaaaagaccactggttactgctttgcttagtgaaatattcggatcgatgtagtacctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
36450476 |
ttgtacagaacataaaccattttccaacatttggaaagaagaaaagaccactggttactgctttgcttagtgaaatattcggat----gcagtacctttt |
36450571 |
T |
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| Q |
101 |
taaaatatgtgtatctttccataattaattttaggaaaggggttctgataatccgaagtttgaccgtgatataatgaaacattttaatcaaccacacacc |
200 |
Q |
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| T |
36450572 |
taaaatatgtgtatctttccataattaattttaggaaaggggttctgataatccgaagtttgaccgtgatataatgaaacattttaatcaaccacacacc |
36450671 |
T |
|
| Q |
201 |
attcaaagattcatttatgaaacatctttttaactgcaataatataagctaaaacacaacatg----------------ccaagcatttgttccatgtca |
284 |
Q |
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| T |
36450672 |
attcaaagattcatttatgaaacatctttttaactgcaataatataagctaaaacacaacatgccaaataaaagatgtaccaagcatttgttccatgtca |
36450771 |
T |
|
| Q |
285 |
cacctctccaattagtgcatgcatgcatctggttctttctacccttcctg-cccctaatatgcttcaatcatgataagttcaactttttgaaaaactaat |
383 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36450772 |
cacctctccaattagtgcatgcatgcatctgattctttctacccttgctgccccctaatatgcttcaatcatgataagttcaactttttgaaaaactaat |
36450871 |
T |
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| Q |
384 |
-------tacagcatagcaaattcatctctatctcagccatcaccttgttga |
428 |
Q |
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| T |
36450872 |
tagtaagtacagcatagcaaattcatctctatctcagccatcaccttgttga |
36450923 |
T |
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