View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8528_low_12 (Length: 374)
Name: NF8528_low_12
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8528_low_12 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 49114539 - 49114895
Alignment:
| Q |
18 |
atcaaattcacattcatttgtctttttaagaatccaatcaaagtcatgtcataaataattctattattaaacatacatctaaaaatcttatgaaatattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49114539 |
atcaaattcacattcatttgtctttttaagaatccaatcaaagtcatgtcataaataattctattattaaacatacatctaaaaatcttatgaaatattc |
49114638 |
T |
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| Q |
118 |
cctgtcaagtgaactcccaacatctcggttaggctttgcttttgtagcaacaagtaccctcacagagcctggaccaccttcctcttttgtgtaaccatcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49114639 |
cctgtcaagtgaactcccaacatctcggttaggctttgcttttgtagcaacaagtaccctcacagagcctggaccaccttcctcttttgtgtaaccatcc |
49114738 |
T |
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| Q |
218 |
tataaaacacaagttgcattacaacacatgttagtaacattcccaatgtgtcaaatgagtagcaaattgagttgacaacctaaaagtacaaacaactacc |
317 |
Q |
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| T |
49114739 |
tataaaacacaagttgcattacaacacatgttagtaacattcccaatgtgtcaaatgagtagcaaattgagttgacaacctaaaagtacaaacaactacc |
49114838 |
T |
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| Q |
318 |
tgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttga |
374 |
Q |
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| T |
49114839 |
tgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttga |
49114895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 49102421 - 49102555
Alignment:
| Q |
87 |
aacatacatctaaaaatcttatgaaatattccctgtcaagtgaactcccaacatctcggttaggctttgcttttgtagcaacaagtaccctcacagagcc |
186 |
Q |
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| T |
49102421 |
aacatacatttaaaaagtttatgaaatattccctgtcaagcgaacttccaacatcttggttaggctttgcttttgtagcaacaagtaccctcaccgagtc |
49102520 |
T |
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| Q |
187 |
tggaccaccttcctcttttgtgtaaccatcctata |
221 |
Q |
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| T |
49102521 |
ttcaccacgtacctcttttgtgtaaccatcctata |
49102555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 49102775 - 49102857
Alignment:
| Q |
292 |
acaacctaaaagtacaaacaactacctgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttga |
374 |
Q |
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| T |
49102775 |
acaacctaaaagaacaatcaactacctgacattttcctttgccgttcttcacaaagcaataaggatctctgagtccttgttga |
49102857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 6957407 - 6957343
Alignment:
| Q |
310 |
caactacctgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttga |
374 |
Q |
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| T |
6957407 |
caactacctgacatctccctttgccattcttgacaaagcaaaatggatctgttagtccttgttga |
6957343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 6957794 - 6957702
Alignment:
| Q |
88 |
acatacatctaaaaatcttatgaaatattccctgtcaagtgaactcccaacatctcggttaggctttgcttttgtagcaacaagtaccctcac |
180 |
Q |
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| T |
6957794 |
acatacatttaagaagcttttgaagtattctctatcaagtgagctccttatatccttgttaggctttgcttttgtagcaacaagtaccttcac |
6957702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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