View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8528_low_14 (Length: 334)
Name: NF8528_low_14
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8528_low_14 |
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| [»] scaffold0054 (2 HSPs) |
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| [»] scaffold0613 (1 HSPs) |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 7794031 - 7794332
Alignment:
| Q |
18 |
atatttcaactcagataattatatacaaggaaatcattcatgcgatggaggaataagtaattgattgtgttttctggttttcagcaagaggtatatgatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7794031 |
atatttcaactcagataattatatacaaggaaatcattcatgcgatggaggaataagtaattgattgtgttttctggttttcagcaagaggtatatgatt |
7794130 |
T |
|
| Q |
118 |
atggttattaagaaattaccttttgtgaaaaatgactagtcaattatgcatataaaaattatttggaactaaattatgaaatcatttgatcttgatttat |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7794131 |
atggttattaagatattaccttttgtgaaaaatgactagtcaattgtgcatataaaaattatttggaactaaattatgaaatcatttgatcttgatttat |
7794230 |
T |
|
| Q |
218 |
aannnnnnnnnnaatgtttagtctctttttatttgcaaactaattgattttgaaatcattgaaaagaataaatgttggatagttatttttagtttcatac |
317 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7794231 |
aa-tttttttttaatgtttagtctctttttatttgcaaactaattgattttgaaatcattgaaaagaataaatgttggatagttatttttagtttcatac |
7794329 |
T |
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| Q |
318 |
aca |
320 |
Q |
| |
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||| |
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| T |
7794330 |
aca |
7794332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 42446563 - 42446669
Alignment:
| Q |
33 |
taattatatacaaggaaatcattcatgcgat-ggaggaataagtaattgattgtgttttctggttttcagcaagaggtatatgattatggttattaagaa |
131 |
Q |
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|||| ||||||||||||| ||||| | | || |||||||||| ||||| ||||| |||||| ||||||| |||||||||||||||| ||||| || ||| |
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| T |
42446563 |
taataatatacaaggaaaacattcttccaattggaggaataattaattaattgt-ttttcttgttttcaccaagaggtatatgattgtggttcttgagat |
42446661 |
T |
|
| Q |
132 |
attacctt |
139 |
Q |
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|||||||| |
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| T |
42446662 |
attacctt |
42446669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 285
Target Start/End: Complemental strand, 33313 - 33064
Alignment:
| Q |
39 |
tatacaaggaaatcattcatgcgatgga-ggaataagtaattgattgtgttttctggttttcagcaagaggtatatgattatggttattaaga-aattac |
136 |
Q |
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|||||||||||| ||||| ||| || || ||||||||||||| ||| | ||||| ||||||| |||||||||||||||| |||||||| ||| ||||| |
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| T |
33313 |
tatacaaggaaaacattcttgccattgaaggaataagtaattaattat-ttttcatgttttcaccaagaggtatatgattgtggttattgagattattac |
33215 |
T |
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| Q |
137 |
cttttgtgaaaaatgactagtcaattatgcatataaaaattatttggaactaaattatgaaatcatttgatcttgatttat-aannnnnnnnnnaatgtt |
235 |
Q |
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||| |||| ||| || ||| |||| ||||||| | ||||||| || ||||||||||||||| ||||| ||| ||||| || |||||| |
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| T |
33214 |
cttgtgtgcaaagtggctataaaattgtgcatatcacaattattgtcaaataaattatgaaatcaattgatattgctttatcaactttcttttgaatgtt |
33115 |
T |
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| Q |
236 |
tagtctctttttatttgcaaactaat-tgattttgaaatcattgaaaagaa |
285 |
Q |
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|||||||||| ||||||| |||| || ||||||| |||||||||| ||||| |
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| T |
33114 |
tagtctctttctatttgctaactgatatgattttcaaatcattgacaagaa |
33064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 39636 - 39558
Alignment:
| Q |
66 |
aggaataagtaattgattgtgttttctggttttcagcaagaggtatatgattatggttattaagaa-attaccttttgtg |
144 |
Q |
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|||||||||||||| ||| | |||||| ||||||| ||||||||||||||| |||||||| |||| |||||||| |||| |
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| T |
39636 |
aggaataagtaattaattat-ttttcttgttttcaccaagaggtatatgatcgtggttattgagaatattaccttgtgtg |
39558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 29145576 - 29145706
Alignment:
| Q |
87 |
ttttctggttttcagcaagaggtatatgattatggttattaagaaattaccttttgtgaaaaatgactagtcaattatgcatataaaaattatttggaac |
186 |
Q |
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|||||| ||| ||| |||||||||||||||| ||||| || ||| ||||| |||| || ||| || | ||||||| ||||||| | ||||||| || |
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| T |
29145576 |
ttttcttgttatcaccaagaggtatatgattgtggttgttgagatattacattttatgcaaactggtttgtcaattgtgcatatcacaattattgtcaag |
29145675 |
T |
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| Q |
187 |
taaattatgaaatcatttgatcttgatttat |
217 |
Q |
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||||||||||||||| ||||||||| ||||| |
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| T |
29145676 |
taaattatgaaatcaattgatcttgctttat |
29145706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0613
Description:
Target: scaffold0613; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 486 - 523
Alignment:
| Q |
102 |
caagaggtatatgattatggttattaagaaattacctt |
139 |
Q |
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||||||||||||||||||||||||| ||| |||||||| |
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| T |
486 |
caagaggtatatgattatggttattgagatattacctt |
523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 16013 - 15976
Alignment:
| Q |
102 |
caagaggtatatgattatggttattaagaaattacctt |
139 |
Q |
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||||||||||||||||||||||||| ||| |||||||| |
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| T |
16013 |
caagaggtatatgattatggttattgagatattacctt |
15976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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