View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8528_low_15 (Length: 329)

Name: NF8528_low_15
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8528_low_15
NF8528_low_15
[»] chr7 (1 HSPs)
chr7 (23-329)||(33109717-33110030)
[»] chr5 (6 HSPs)
chr5 (41-98)||(31206378-31206435)
chr5 (46-98)||(4603917-4603969)
chr5 (46-98)||(11064661-11064713)
chr5 (46-94)||(23016712-23016760)
chr5 (46-98)||(24286209-24286261)
chr5 (46-98)||(24375961-24376013)
[»] chr4 (2 HSPs)
chr4 (30-98)||(6427112-6427179)
chr4 (49-98)||(42281102-42281151)
[»] chr2 (4 HSPs)
chr2 (46-98)||(7250363-7250415)
chr2 (46-98)||(43963869-43963921)
chr2 (43-101)||(19174899-19174957)
chr2 (46-98)||(35943824-35943876)
[»] chr1 (3 HSPs)
chr1 (50-98)||(26986090-26986138)
chr1 (41-98)||(39714655-39714712)
chr1 (41-101)||(37047127-37047187)
[»] chr3 (2 HSPs)
chr3 (50-99)||(26158955-26159004)
chr3 (46-98)||(40302651-40302703)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 329
Target Start/End: Original strand, 33109717 - 33110030
Alignment:
Q  23 ctgctttaatgcggcccgacaaatggacggtgggattgaacccctcggattagtatgtccttgggccggataccgaattcagagtgttatccttcctttt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33109717 ctgctttaatgcggcccgacaaatggacggtgggattgaacccctcggattagtatgtccttgggccggataccgaattcagagtgttatccttcctttt 33109816  T
Q  123 atgaaagcttaggcatc-------atacatcatgcattgctacccctcagcaaaatccagctagtgtacctgtcatttgatcatgatttttctcatacca 215  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33109817 atgaaagcttaggcatcattcatcatacatcatgcattgctacccctcagcaaaatccagctagtgtacctgtcatttgatcatgatttttctcatacca 33109916  T
Q  216 tgctttctgaaaacaatatatcttctcccgtgtcttctcaaactcgaagtgatctttctgataataataataatttgatttcgcaagtcacgaatcatga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33109917 tgctttctgaaaacaatatatcttctcccgtgtcttctcaaactcgaagtgatctttctgataataataataatttgatttcgcaagtcacaaatcatga 33110016  T
Q  316 taacatttacaaat 329  Q
    ||||||||||||||    
T  33110017 taacatttacaaat 33110030  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 31206378 - 31206435
Alignment:
Q  41 acaaatggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    |||| ||||||||||||||| || ||||||||||||  ||||||||||||||||||||    
T  31206378 acaagtggacggtgggattggactcctcggattagtcggtccttgggccggataccga 31206435  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 4603917 - 4603969
Alignment:
Q  46 tggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    |||||||||||||||  ||||||||||||||  ||||||||  ||||||||||    
T  4603917 tggacggtgggattggtcccctcggattagtcggtccttggatcggataccga 4603969  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 11064661 - 11064713
Alignment:
Q  46 tggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    ||||| ||||||||||| |||||| |||||| ||||||| ||| |||||||||    
T  11064661 tggacagtgggattgaaaccctcgaattagtctgtccttaggctggataccga 11064713  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 23016760 - 23016712
Alignment:
Q  46 tggacggtgggattgaacccctcggattagtatgtccttgggccggata 94  Q
    ||||||||| ||||| |||||||||||||||| |||||| | |||||||    
T  23016760 tggacggtgagattggacccctcggattagtaggtccttagaccggata 23016712  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 24286261 - 24286209
Alignment:
Q  46 tggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    ||||| ||||||||| |||| ||||||||||  |||||| |||||||||||||    
T  24286261 tggacagtgggattggacccatcggattagtcagtccttaggccggataccga 24286209  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 24375961 - 24376013
Alignment:
Q  46 tggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    ||||| ||||||||| |||| ||||||||||  |||||| |||||||||||||    
T  24375961 tggacagtgggattggacccatcggattagtcagtccttaggccggataccga 24376013  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 6427112 - 6427179
Alignment:
Q  30 aatgcggcccgacaaatggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    |||| ||||| |||| ||||| ||||||||||| |||||||||||||  |||||| |||||||||||||    
T  6427112 aatggggccccacaagtggacagtgggattgaatccctcggattagtcggtcctt-ggccggataccga 6427179  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 42281151 - 42281102
Alignment:
Q  49 acggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    |||||||| ||| ||||||||||||||| |||  ||||||||||||||||    
T  42281151 acggtggggttggacccctcggattagtctgtttttgggccggataccga 42281102  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 7250363 - 7250415
Alignment:
Q  46 tggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    ||||| ||||||||| |||||||||||||||  ||||||||||| ||||||||    
T  7250363 tggacagtgggattggacccctcggattagtccgtccttgggccagataccga 7250415  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 43963921 - 43963869
Alignment:
Q  46 tggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    ||||||||||||||| ||||||| |||||||  |||||||||| |||||||||    
T  43963921 tggacggtgggattggacccctcagattagttggtccttgggctggataccga 43963869  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 19174899 - 19174957
Alignment:
Q  43 aaatggacggtgggattgaacccctcggattagtatgtccttgggccggataccgaatt 101  Q
    |||||| |||||||||||| |||||||||||| |  ||||||||  |||||||||||||    
T  19174899 aaatgggcggtgggattgatcccctcggattaatcggtccttggatcggataccgaatt 19174957  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 35943824 - 35943876
Alignment:
Q  46 tggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    ||||||||||||||| |||||||||||||||  ||||| |||||  |||||||    
T  35943824 tggacggtgggattggacccctcggattagttggtcctcgggccaaataccga 35943876  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 26986138 - 26986090
Alignment:
Q  50 cggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    ||||||||||| |||||||||| ||||  ||||||||||||||||||||    
T  26986138 cggtgggattggacccctcggaatagtcggtccttgggccggataccga 26986090  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 39714712 - 39714655
Alignment:
Q  41 acaaatggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    |||| |||| |||||||||| || ||||||||||||  |||||||||| |||||||||    
T  39714712 acaagtggatggtgggattggactcctcggattagtcggtccttgggctggataccga 39714655  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 37047127 - 37047187
Alignment:
Q  41 acaaatggacggtgggattgaacccctcggattagtatgtccttgggccggataccgaatt 101  Q
    |||| ||||||||||||||| |||||| ||||||||  | ||||||||| |||||| ||||    
T  37047127 acaagtggacggtgggattggacccctaggattagtcggcccttgggcccgataccaaatt 37047187  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 26158955 - 26159004
Alignment:
Q  50 cggtgggattgaacccctcggattagtatgtccttgggccggataccgaa 99  Q
    |||||||||||| ||||||||||||||  ||||||||  |||||||||||    
T  26158955 cggtgggattgatcccctcggattagtcggtccttggatcggataccgaa 26159004  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 40302703 - 40302651
Alignment:
Q  46 tggacggtgggattgaacccctcggattagtatgtccttgggccggataccga 98  Q
    ||||||||||||||| |||||||  ||||||  |||||||||| |||||||||    
T  40302703 tggacggtgggattggacccctcaaattagtcggtccttgggctggataccga 40302651  T

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