View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8528_low_16 (Length: 317)

Name: NF8528_low_16
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8528_low_16
NF8528_low_16
[»] chr1 (1 HSPs)
chr1 (24-317)||(27893543-27893836)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 24 - 317
Target Start/End: Complemental strand, 27893836 - 27893543
Alignment:
Q  24 tcgtgttcaacaacatgtgactagaccctagaacatctaaaaagacacatatgtatgactttaaaatccaccacaacgccaatcaatggtacgagatggt 123  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27893836 tcgtgttcaagaacatgtgactagacactagaacatctaaaaagacacatatgtatgactttaaaatccaccacaacgccaatcaatggtacgagatggt 27893737  T
Q  124 ttaaacctaacaagctacatgcaagttaaccttactttgaatttaataaaagatgtaaaaattgataagaaaaatcttagtttgtcggtacggggttttg 223  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27893736 ttaaacctaacaagctacatgcaagttaactttactttgaatttaataaaagatgtaaaaattgataagaaaaatcttagtttgtcgggacggggttttg 27893637  T
Q  224 tggttcttggcgcactttgtgagtgttcccactatatggtaaaattaaaatgacaatgagaagggaagagatcattagtaaattatgagtgaga 317  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27893636 tggttcttggtgcactttgtgaatgttcccactatatggtaaaattaaaatgacaatgagaagggaagagatcattagtaaattatgagtgaga 27893543  T

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