View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8528_low_3 (Length: 676)

Name: NF8528_low_3
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8528_low_3
NF8528_low_3
[»] chr4 (6 HSPs)
chr4 (18-668)||(54972786-54973436)
chr4 (207-255)||(55232145-55232193)
chr4 (195-252)||(27862854-27862912)
chr4 (195-255)||(38690677-38690738)
chr4 (195-248)||(44251350-44251403)
chr4 (195-252)||(45847949-45848007)
[»] chr3 (14 HSPs)
chr3 (205-255)||(37756447-37756497)
chr3 (205-255)||(166799-166849)
chr3 (195-252)||(9320982-9321040)
chr3 (195-248)||(27471522-27471576)
chr3 (206-248)||(32421366-32421408)
chr3 (205-255)||(38869225-38869275)
chr3 (195-248)||(47864654-47864708)
chr3 (195-248)||(50381732-50381786)
chr3 (195-246)||(24559408-24559461)
chr3 (195-248)||(27817091-27817144)
chr3 (195-255)||(45431638-45431699)
chr3 (195-238)||(4227739-4227783)
chr3 (205-253)||(9489490-9489538)
chr3 (197-232)||(49983705-49983741)
[»] chr5 (7 HSPs)
chr5 (195-255)||(34729483-34729543)
chr5 (208-255)||(31991798-31991845)
chr5 (195-238)||(41083533-41083576)
chr5 (208-254)||(3294095-3294141)
chr5 (205-255)||(31154152-31154202)
chr5 (197-248)||(962306-962358)
chr5 (163-195)||(12256473-12256505)
[»] chr1 (7 HSPs)
chr1 (206-255)||(24253678-24253727)
chr1 (195-252)||(19424060-19424118)
chr1 (197-252)||(14262746-14262802)
chr1 (205-251)||(33931207-33931253)
chr1 (172-248)||(22386234-22386313)
chr1 (195-238)||(32635168-32635212)
chr1 (195-246)||(43021617-43021669)
[»] chr6 (4 HSPs)
chr6 (205-252)||(1128453-1128500)
chr6 (195-232)||(31952306-31952344)
chr6 (195-232)||(32788849-32788887)
chr6 (205-254)||(34368174-34368222)
[»] chr7 (8 HSPs)
chr7 (205-255)||(46570005-46570055)
chr7 (195-254)||(46195930-46195990)
chr7 (205-248)||(25965764-25965807)
chr7 (195-248)||(14707311-14707364)
chr7 (195-248)||(44662486-44662540)
chr7 (205-255)||(48525588-48525638)
chr7 (207-255)||(8249716-8249764)
chr7 (206-246)||(38151367-38151407)
[»] chr8 (5 HSPs)
chr8 (195-255)||(10621398-10621459)
chr8 (194-252)||(22652697-22652756)
chr8 (195-229)||(35253847-35253881)
chr8 (195-251)||(30659968-30660025)
chr8 (208-248)||(19733106-19733146)
[»] chr2 (6 HSPs)
chr2 (195-255)||(24202161-24202222)
chr2 (205-255)||(42541167-42541216)
chr2 (195-255)||(25783237-25783297)
chr2 (195-238)||(3596281-3596325)
chr2 (206-246)||(28819495-28819535)
chr2 (195-238)||(44558033-44558077)
[»] scaffold0011 (1 HSPs)
scaffold0011 (205-248)||(15365-15407)
[»] scaffold0227 (1 HSPs)
scaffold0227 (195-229)||(21887-21921)


Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 668
Target Start/End: Complemental strand, 54973436 - 54972786
Alignment:
Q  18 atcaaggcccctccattaacattttctttactcccatttcagtgtacatcggaatagactatttatagaaccaacaactttatactcgtgcatgccattg 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54973436 atcaaggcccctccattaacattttctttgctcccatttcagtgtacatgggaatagactatttatagaaccaacaactttatacttgtgcatgccattg 54973337  T
Q  118 attaagagttctttttagtgtaacaatacnnnnnnnnnctttccgccaaatagcctagcggctagagaaattcaccttggggtgtccgggttcgaacccc 217  Q
    |||||||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  54973336 attaagagttctttttagtgtaacaatactttttttttttctccgccaaatagcctagcggctagagaaattcaccttggggtgtcggggttcgaaccct 54973237  T
Q  218 aacccctgcataaatgatgcattatcccttatcaagtgtaacaatacttctactacacgtaaaaatatatacttaattacatcaaaataaataaataaac 317  Q
      || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54973236 ggcctctgcataaatgatgcattatcccttattaagtgtaacaatacttctactacacgtaaaaatatatacttaattacatcaaaataaataaataaac 54973137  T
Q  318 ttcaattgaaaccaatccacttaaattcaatacagtaatatagggcttatgcatcatcatttgtaaaaagttagtgtatggaaaaccaatatgttgcgat 417  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||    
T  54973136 ttcaatcgaaaccaatccacttaaattcaatacagtaatatagggcttatgcatcatcatttgtaaaaagttagtttatgtaaaaccaatatgtttccat 54973037  T
Q  418 atgatgaatggggatatgggatagtgcagttgaaaaatgcagatgtggaaaaaagggatccaagtacagttgtggcggttatacttggtggaggagctgg 517  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54973036 atgatgaatgtgaatatgggatagtgcagttgaaaaatgcagatgtggaaaaaagggatccaagtacagttgtggcggttatacttggtggaggagctgg 54972937  T
Q  518 aacccgtctcttccctttaactaagcgacgagcaaagcctgctgtaagtttttcttttcttattctttcaccattttctcaattgttccattcattataa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54972936 aacccgtctcttccctttaactaagcgacgagcaaagcctgctgtaagtttttcttttcttattctttcaccattttctcaattgttccattcattataa 54972837  T
Q  618 gcatagtagttgcttatagtttgatcctatgaagcactaacgtaaacacga 668  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54972836 gcatagtagttgcttatagtttgatcctatgaagcactaacgcaaacacga 54972786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 55232145 - 55232193
Alignment:
Q  207 gttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  55232145 gttcgaaccccaacccatgcataaattatgcgttatcccttatcaagtg 55232193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 27862854 - 27862912
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaa 252  Q
    ||||||||||||| ||||||||||| |||||||| ||||  ||||||||||||||||||    
T  27862854 tggggtgtccggggttcgaaccccagcccctgcacaaattgtgcattatcccttatcaa 27862912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 38690738 - 38690677
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    ||||||||||||| |||||||||| ||||||||||| |  ||||||||||||||| ||||||    
T  38690738 tggggtgtccggggttcgaaccccgacccctgcatataatatgcattatcccttaccaagtg 38690677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 44251350 - 44251403
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    ||||||||||||| |||||||||| |||||||||||||  |||||||||||||||    
T  44251350 tggggtgtccgggattcgaaccccgacccctgcataaa-aatgcattatccctta 44251403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 45847949 - 45848007
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaa 252  Q
    ||||||||||||| |||||||||| | ||||||| | || |||||||||||||||||||    
T  45847949 tggggtgtccggggttcgaaccccgatccctgcacatattatgcattatcccttatcaa 45848007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 37756447 - 37756497
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  37756447 gggttcgaaccccagcccctgcataaattatgcattatcccttatcaagtg 37756497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 166849 - 166799
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    |||||||||||||  ||||||||||||| ||||||||||||||| ||||||    
T  166849 gggttcgaaccccggcccctgcataaattatgcattatcccttaccaagtg 166799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 9320982 - 9321040
Alignment:
Q  195 tggggtgtccgggtt-cgaaccccaacccctgcataaatgatgcattatcccttatcaa 252  Q
    |||||||| |||||| |||||||||||||||||| ||||  | ||||||||||||||||    
T  9320982 tggggtgttcgggtttcgaaccccaacccctgcacaaattgtacattatcccttatcaa 9321040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 27471576 - 27471522
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    ||||||||||||| |||||||||||||||||| | | || |||||||||||||||    
T  27471576 tggggtgtccggggttcgaaccccaacccctgtacatattatgcattatccctta 27471522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 32421408 - 32421366
Alignment:
Q  206 ggttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    |||||||||||| ||||||||||| || |||||||||||||||    
T  32421408 ggttcgaaccccgacccctgcatatattatgcattatccctta 32421366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 38869225 - 38869275
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    ||||||||||||| ||||||||||  || ||||||||||||||| ||||||    
T  38869225 gggttcgaaccccgacccctgcatgtattatgcattatcccttaccaagtg 38869275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 47864708 - 47864654
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    ||||||||||||| |||||||||||||||||||| | ||  ||||||||||||||    
T  47864708 tggggtgtccggggttcgaaccccaacccctgcacatattgtgcattatccctta 47864654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 50381786 - 50381732
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    ||||||||||||| |||||||||| ||||||||||| ||  ||||||||||||||    
T  50381786 tggggtgtccgggattcgaaccccgacccctgcatatattgtgcattatccctta 50381732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 24559461 - 24559408
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcata-aatgatgcattatccct 246  Q
    ||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||    
T  24559461 tggggtgtccggggttcgaaccccgacccctgcatataattatgcattatccct 24559408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 27817091 - 27817144
Alignment:
Q  195 tggggtgtccgggttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    |||||||||||||||||||| ||  |||||||| ||||  ||||||||||||||    
T  27817091 tggggtgtccgggttcgaactccggcccctgcacaaattgtgcattatccctta 27817144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 45431699 - 45431638
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    ||||||||||||| |||||||||  |||||||||||||  | ||||||||||||| ||||||    
T  45431699 tggggtgtccggggttcgaaccctgacccctgcataaaatacgcattatcccttaccaagtg 45431638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 4227739 - 4227783
Alignment:
Q  195 tggggtgtccgg-gttcgaaccccaacccctgcataaatgatgca 238  Q
    |||||||||||| ||||||||||| |||||||||||||| |||||    
T  4227739 tggggtgtccggagttcgaaccccgacccctgcataaattatgca 4227783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 9489538 - 9489490
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaag 253  Q
    |||||||||||||  |||||||||| || ||||||||||||||| ||||    
T  9489538 gggttcgaaccccggcccctgcatacataatgcattatcccttaccaag 9489490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 49983705 - 49983741
Alignment:
Q  197 gggtgtccggg-ttcgaaccccaacccctgcataaat 232  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49983705 gggtgtccggggttcgaaccccaacccctgcataaat 49983741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 34729543 - 34729483
Alignment:
Q  195 tggggtgtccgggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    ||||||||||||||||||||||| ||||||||||| |  ||||||||||||||| ||||||    
T  34729543 tggggtgtccgggttcgaaccccgacccctgcatataatatgcattatcccttaccaagtg 34729483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 31991798 - 31991845
Alignment:
Q  208 ttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    |||||||||| ||||||||||| || ||||||||||||||| ||||||    
T  31991798 ttcgaaccccgacccctgcatatataatgcattatcccttaccaagtg 31991845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 41083533 - 41083576
Alignment:
Q  195 tggggtgtccgggttcgaaccccaacccctgcataaatgatgca 238  Q
    |||||||||||| |||||||||| |||||||||||||| |||||    
T  41083533 tggggtgtccggattcgaaccccgacccctgcataaattatgca 41083576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 3294141 - 3294095
Alignment:
Q  208 ttcgaaccccaacccctgcataaatgatgcattatcccttatcaagt 254  Q
    ||||||||||  ||||||||||||| ||||||||||||||| |||||    
T  3294141 ttcgaaccccggcccctgcataaattatgcattatcccttaacaagt 3294095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 31154152 - 31154202
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    ||||||||| |||| ||||| ||||||| ||| ||||||||||||||||||    
T  31154152 gggttcgaatcccagccccttcataaattatgtattatcccttatcaagtg 31154202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 962358 - 962306
Alignment:
Q  197 gggtgtccgg-gttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    |||||||||| ||||||||||||||||||||||| |  ||||||||| |||||    
T  962358 gggtgtccggagttcgaaccccaacccctgcatataacatgcattattcctta 962306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 12256473 - 12256505
Alignment:
Q  163 ccaaatagcctagcggctagagaaattcacctt 195  Q
    |||| ||||||||||||||||||||||||||||    
T  12256473 ccaagtagcctagcggctagagaaattcacctt 12256505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 24253678 - 24253727
Alignment:
Q  206 ggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  24253678 ggttcgaatcccgacccctgcataaattatgcattatcccttatcaagtg 24253727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 19424118 - 19424060
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaa 252  Q
    ||||||||||||| |||||||||| ||||||||||| |  |||||||||||||||||||    
T  19424118 tggggtgtccggggttcgaaccccgacccctgcatataatatgcattatcccttatcaa 19424060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 14262746 - 14262802
Alignment:
Q  197 gggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaa 252  Q
    ||||||||||| |||||||||| ||||||||||| ||  ||||||||||||||||||    
T  14262746 gggtgtccggggttcgaaccccgacccctgcatatattgtgcattatcccttatcaa 14262802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 33931253 - 33931207
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatca 251  Q
    ||||||||||| |||||| |||| |||| ||||||||||||||||||    
T  33931253 gggttcgaaccacaacccttgcacaaattatgcattatcccttatca 33931207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 22386234 - 22386313
Alignment:
Q  172 ctagcggctagagaaattcaccttg--gggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    |||| |||||||||||||||||||   ||||||| ||| |||||||||||||||||||| | ||  ||||| ||||||||    
T  22386234 ctagtggctagagaaattcaccttaaagggtgtctggggttcgaaccccaacccctgcacatattgtgcataatccctta 22386313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 32635212 - 32635168
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgca 238  Q
    ||||||||||||| |||||||||||||||||||||| || |||||    
T  32635212 tggggtgtccggggttcgaaccccaacccctgcatatataatgca 32635168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 43021617 - 43021669
Alignment:
Q  195 tggggtgtccg-ggttcgaaccccaacccctgcataaatgatgcattatccct 246  Q
    ||||||||||| |||||||||||| |||||||||||||  ||||||| |||||    
T  43021617 tggggtgtccgaggttcgaaccccgacccctgcataaaatatgcattgtccct 43021669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 1128453 - 1128500
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaa 252  Q
    ||||||||||||||||||||||| | || |||||||||||||||||||    
T  1128453 gggttcgaaccccaacccctgcacatattatgcattatcccttatcaa 1128500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 31952344 - 31952306
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaat 232  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  31952344 tggggtgtccggggttcgaaccccaacccctgcataaat 31952306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 32788849 - 32788887
Alignment:
Q  195 tggggtgtccgg-gttcgaaccccaacccctgcataaat 232  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  32788849 tggggtgtccggagttcgaaccccaacccctgcataaat 32788887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 34368222 - 34368174
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagt 254  Q
    ||||||||||| ||||||||||||| || ||||||||||| |||||||||    
T  34368222 gggttcgaacctcaacccctgcatatat-atgcattatcctttatcaagt 34368174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 46570005 - 46570055
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    |||||||||||||  ||||||||||||  ||||||||||||||||||||||    
T  46570005 gggttcgaaccccggcccctgcataaactatgcattatcccttatcaagtg 46570055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 46195990 - 46195930
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaagt 254  Q
    ||||||||||||| ||| |||||| ||||||||||| || || ||||||||||||||||||    
T  46195990 tggggtgtccggggttcaaaccccgacccctgcatacataatacattatcccttatcaagt 46195930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 25965807 - 25965764
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    |||||| |||||||| |||||||||||| |||||||||||||||    
T  25965807 gggttcaaaccccaaaccctgcataaattatgcattatccctta 25965764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 14707364 - 14707311
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    ||||||||||||| |||||||||||||||||||||| |  |||||||||||||||    
T  14707364 tggggtgtccggggttcgaaccccaacccctgcatata-aatgcattatccctta 14707311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 44662486 - 44662540
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    ||||||||||||| ||||||||||  |||||||||| || |||||||||||||||    
T  44662486 tggggtgtccggggttcgaaccccggcccctgcatacataatgcattatccctta 44662540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 48525638 - 48525588
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    ||||||||||||||||||||||||| |  ||||||| ||||||| ||||||    
T  48525638 gggttcgaaccccaacccctgcatataatatgcattgtcccttaccaagtg 48525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 8249764 - 8249716
Alignment:
Q  207 gttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    ||||||||||| ||||||||||| || ||||||||||| ||| ||||||    
T  8249764 gttcgaaccccgacccctgcatatattatgcattatcctttaccaagtg 8249716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 38151407 - 38151367
Alignment:
Q  206 ggttcgaaccccaacccctgcataaatgatgcattatccct 246  Q
    |||||||||||| |||||||||||||| ||||| |||||||    
T  38151407 ggttcgaaccccgacccctgcataaataatgcaatatccct 38151367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 10621398 - 10621459
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    ||||||||||||| ||| |||||  ||||||||||| || ||||||||||||||||||||||    
T  10621398 tggggtgtccggggttcaaaccctgacccctgcatacataatgcattatcccttatcaagtg 10621459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 22652756 - 22652697
Alignment:
Q  194 ttggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaa 252  Q
    |||||||||||||| ||||||| ||  |||||||| |||| |||||||||||||||||||    
T  22652756 ttggggtgtccggggttcgaacaccggcccctgcacaaattatgcattatcccttatcaa 22652697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 35253847 - 35253881
Alignment:
Q  195 tggggtgtccgggttcgaaccccaacccctgcata 229  Q
    |||||||||||| ||||||||||||||||||||||    
T  35253847 tggggtgtccggattcgaaccccaacccctgcata 35253881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 30660025 - 30659968
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatca 251  Q
    ||||||||||||| || ||||||| ||||||||||| || || |||||||||||||||    
T  30660025 tggggtgtccggggtttgaaccccgacccctgcatacataatacattatcccttatca 30659968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 19733106 - 19733146
Alignment:
Q  208 ttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    |||||||||| ||||||||||| || |||||||||||||||    
T  19733106 ttcgaaccccgacccctgcatatattatgcattatccctta 19733146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 24202222 - 24202161
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    ||||||||||||| ||||||||||  |||||||||| || ||||||||||||||| ||||||    
T  24202222 tggggtgtccggggttcgaaccccggcccctgcatacataatgcattatcccttaccaagtg 24202161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 42541216 - 42541167
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    |||||||||||||| ||||||||||||| || |||||||||||| ||||||    
T  42541216 gggttcgaaccccagcccctgcataaat-atccattatcccttaccaagtg 42541167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 25783237 - 25783297
Alignment:
Q  195 tggggtgtcc-gggttcgaaccccaacccctgcataaatgatgcattatcccttatcaagtg 255  Q
    |||||||||| |||||||||||| |||||||||||| || ||||||||||||| | ||||||    
T  25783237 tggggtgtccagggttcgaaccctaacccctgcatatat-atgcattatccctcaccaagtg 25783297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 3596325 - 3596281
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgca 238  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||    
T  3596325 tggggtgtccggggttcgaaccccgacccctgcataaattatgca 3596281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 28819535 - 28819495
Alignment:
Q  206 ggttcgaaccccaacccctgcataaatgatgcattatccct 246  Q
    |||||||||| |||||||||||||||| ||||| |||||||    
T  28819535 ggttcgaacctcaacccctgcataaattatgcaatatccct 28819495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 44558077 - 44558033
Alignment:
Q  195 tggggtgtccggg-ttcgaaccccaacccctgcataaatgatgca 238  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||    
T  44558077 tggggtgtccggggttcgaaccccagcccctgcataaattatgca 44558033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 15365 - 15407
Alignment:
Q  205 gggttcgaaccccaacccctgcataaatgatgcattatccctta 248  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  15365 gggttcgaaccccgacccctgcataaat-atgcattatccctta 15407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 21921 - 21887
Alignment:
Q  195 tggggtgtccgggttcgaaccccaacccctgcata 229  Q
    |||||||| ||||||||||||||||||||||||||    
T  21921 tggggtgttcgggttcgaaccccaacccctgcata 21887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University