View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8528_low_4 (Length: 675)
Name: NF8528_low_4
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8528_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 197 - 651
Target Start/End: Original strand, 41994298 - 41994755
Alignment:
| Q |
197 |
cttcgttgtatttcgttactttgtttacaaaaatataattaatgaatatttggattagacaattttaataggataaataaaatttttactatatttt-aa |
295 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || |
|
|
| T |
41994298 |
cttcgttgtattttgttactttgtttacaaaaatataattaatgaatatttggattagacaattttaataggataaataaattttttattatatttttaa |
41994397 |
T |
|
| Q |
296 |
taaatgaaagtttctagttttcaacattgaaatatatgtatacnnnnnnnnnnatat--agtttctctctatttgaggtaataatatttgagacgtcaga |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41994398 |
taaatgaaagtttctagttttcaacattgaaatatatgtatacttttttttttatatatagtttctctctatttgaggtaatcatatttgagacgtcaga |
41994497 |
T |
|
| Q |
394 |
cggttagacattaaacatgtatatctctcttaatcaatatttaaacattgtttcgtcatactgtagaagactagtcccttttactggatctaactctcaa |
493 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41994498 |
cggttagacattaaacatgtatacctctcttaatcaatatttaaacattgtttcgtcatactgtagaacactagtcccttttactggatctaactctcaa |
41994597 |
T |
|
| Q |
494 |
tggttaaaatagttagtagtaacatattgtttaacattattttgacgatatatagtccagaaaacaataacaaagtttatggtaaccatacaaatatgtc |
593 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41994598 |
tggttaaaatagttagaagtaacatattgtttaacatttttttgacgatatatagtccaaaaaacaataacaaagtttatggtaaccatacaaatatgtc |
41994697 |
T |
|
| Q |
594 |
ataaataagccaaaaaaaacagagagatcaatttccataactatgctcttcattttac |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41994698 |
ataaataagccaaaaaaaacagagagatcaatttccataactaagctcttcattttac |
41994755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University