View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8528_low_6 (Length: 538)
Name: NF8528_low_6
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8528_low_6 |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 131 - 415
Target Start/End: Original strand, 10203988 - 10204270
Alignment:
| Q |
131 |
ttgtttgggatgtgtatgtgatgatgttatctgttcatgctaaactggatggttttttattaataaagtgattatctatttattaaatagagaatcgaaa |
230 |
Q |
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||||||||||||||| ||||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10203988 |
ttgtttgggatgtgt--gtgatgaagctatctgttcatgctaagttgaatggttttttattaataaagtgattatctatttattaaatagagaatcaaaa |
10204085 |
T |
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| Q |
231 |
tcgttcatgaacttttggatcttatagtaatacttcattgaattaattgtatcataagcacttggcttagaatccaagtattgatattacaaaccacggt |
330 |
Q |
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| T |
10204086 |
tcgttcatgaacttttggatcctatagtaatacttcattgaattaattgtatcataagcacttggcttagaatccaagtattgatattacaaaccaaggt |
10204185 |
T |
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| Q |
331 |
tcaagatttctacaactgattgataattcaggctaaattgaaagatcatcaagttcttcacactcttgtacaaatgtgtgataca |
415 |
Q |
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| T |
10204186 |
tcaagatttctacaactgattgataattcaggctaaattgaaagatcatcaagttcttcacactcttgtacaaatggatgataca |
10204270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 10203796 - 10203921
Alignment:
| Q |
8 |
agatgaatatgatttctaagaattttttcacttgctctctaatgagtatgtggttnnnnnnnnntgtgattaagtgataagtgctctctagtgtgtatgt |
107 |
Q |
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| T |
10203796 |
agatgaatatgatttctaagaatttgtttacttgctctctaatgagtatgtggttaaaaaaa--tgtgatgaagtgataagtgctctctagtgagtatgt |
10203893 |
T |
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| Q |
108 |
gattattatacttgtatttagttttgtt |
135 |
Q |
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| T |
10203894 |
gattgttatacttgtatttagatttgtt |
10203921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 439 - 516
Target Start/End: Original strand, 10204262 - 10204339
Alignment:
| Q |
439 |
gatgatacaggtacatacttcatttattttgagagccatgtcattaatgtccacaaaagggtcaatggaggtccaatg |
516 |
Q |
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| T |
10204262 |
gatgatacaggtacatacttcatttattttgagagccatgtcattaatgtccacgaaagggtcaatggaagtccaatg |
10204339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 12857522 - 12857591
Alignment:
| Q |
131 |
ttgtttgggatgtgtatgtgatgatgttatctgttcatgctaaactggatggttttttattaataaagtgatt |
203 |
Q |
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| T |
12857522 |
ttgtttgggatgtgt--gtgatgatgctatctgtttatgctaagctgaatggtttttc-ttaataaagtgatt |
12857591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 1193208 - 1193333
Alignment:
| Q |
8 |
agatgaatatgatttctaagaattttttcacttgctctctaatgagtatgtggttnnnnnnnnntgtgattaagtgataagtgctctctagtgtgtatgt |
107 |
Q |
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| T |
1193208 |
agatgaatatgatttctaagaatttttttacttgctctctaatgagtatgtggtt--aagaaaatgtgatgaaatgataagtgctctcttgtgagtatat |
1193305 |
T |
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| Q |
108 |
gattattatacttgtatttagttttgtt |
135 |
Q |
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| T |
1193306 |
gattattatacttgtatttagatttgtt |
1193333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 1188654 - 1188738
Alignment:
| Q |
217 |
atagagaatcgaaatcgttcatgaacttttggatcttatagtaatacttcattgaa-ttaattgtatcataagcacttggcttag |
300 |
Q |
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||||| |||| |||| ||||||||||||| |||| ||||||||| |||||||||| || |||||||||| |||||||||||||| |
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| T |
1188654 |
atagaaaatcaaaattgttcatgaactttgtgatcctatagtaattcttcattgaatttcattgtatcatgagcacttggcttag |
1188738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 897038 - 897091
Alignment:
| Q |
9 |
gatgaatatgatttctaagaattttttcacttgctctctaatgagtatgtggtt |
62 |
Q |
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| T |
897038 |
gatgtatatggtttcttagaaattttttacttgctctctaatgagtatgtggtt |
897091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 1237546 - 1237493
Alignment:
| Q |
9 |
gatgaatatgatttctaagaattttttcacttgctctctaatgagtatgtggtt |
62 |
Q |
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| T |
1237546 |
gatgtatatggtttctaagaattattttacttgcactctaatgagtatgtggtt |
1237493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 1194266 - 1194306
Alignment:
| Q |
264 |
ttcattgaattaattgtatcataagcacttggcttagaatc |
304 |
Q |
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| T |
1194266 |
ttcattgaattaattgtatcatgagcagttggcttagaatc |
1194306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 342
Target Start/End: Original strand, 1188856 - 1188888
Alignment:
| Q |
310 |
attgatattacaaaccacggttcaagatttcta |
342 |
Q |
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| T |
1188856 |
attgatattacaaaccaaggttcaagatttcta |
1188888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 20611 - 20680
Alignment:
| Q |
131 |
ttgtttgggatgtgtatgtgatgatgttatctgttcatgctaaactggatggttttttattaataaagtgatt |
203 |
Q |
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| T |
20611 |
ttgtttgggatgtgt--gtgatgatgctatctgtttatgctaagctggatgg-tttttcttaataaagtgatt |
20680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 20256393 - 20256324
Alignment:
| Q |
131 |
ttgtttgggatgtgtatgtgatgatgttatctgttcatgctaaactggatggttttttattaataaagtgatt |
203 |
Q |
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|||||||| |||||| ||||||||| |||||||| ||||||| ||||||| ||||| |||||||||||||| |
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| T |
20256393 |
ttgtttggtatgtgt--gtgatgatgctatctgtttatgctaagctggatgatttttc-ttaataaagtgatt |
20256324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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