View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8528_low_8 (Length: 499)

Name: NF8528_low_8
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8528_low_8
NF8528_low_8
[»] chr2 (29 HSPs)
chr2 (1-488)||(44957441-44957929)
chr2 (334-469)||(13060392-13060526)
chr2 (334-475)||(14104528-14104668)
chr2 (377-473)||(1935012-1935108)
chr2 (377-473)||(10160743-10160839)
chr2 (387-473)||(29677371-29677457)
chr2 (376-473)||(7737870-7737967)
chr2 (377-473)||(9180743-9180839)
chr2 (412-488)||(12796939-12797016)
chr2 (377-473)||(30650909-30651005)
chr2 (409-488)||(25478301-25478381)
chr2 (377-488)||(30631559-30631670)
chr2 (377-488)||(31326719-31326830)
chr2 (377-473)||(9189822-9189918)
chr2 (409-473)||(18344442-18344507)
chr2 (377-473)||(19892485-19892581)
chr2 (377-473)||(28603278-28603374)
chr2 (387-471)||(29677757-29677841)
chr2 (409-473)||(30658274-30658339)
chr2 (412-471)||(19578435-19578495)
chr2 (377-473)||(42926778-42926876)
chr2 (387-473)||(25497344-25497430)
chr2 (409-473)||(35601933-35601998)
chr2 (409-473)||(35639016-35639081)
chr2 (376-471)||(21523985-21524080)
chr2 (409-473)||(21523739-21523803)
chr2 (334-435)||(41559078-41559178)
chr2 (377-457)||(19094531-19094610)
chr2 (418-473)||(40847614-40847670)
[»] chr1 (29 HSPs)
chr1 (339-475)||(36724650-36724786)
chr1 (334-475)||(12906091-12906232)
chr1 (334-488)||(27761843-27761996)
chr1 (333-475)||(31063892-31064034)
chr1 (341-468)||(32987185-32987311)
chr1 (333-475)||(33380938-33381081)
chr1 (336-488)||(24159803-24159954)
chr1 (333-475)||(23193240-23193382)
chr1 (334-473)||(2493837-2493976)
chr1 (376-473)||(47451244-47451341)
chr1 (377-473)||(23192836-23192932)
chr1 (377-473)||(26927741-26927837)
chr1 (377-470)||(3094094-3094187)
chr1 (387-488)||(18784553-18784653)
chr1 (377-473)||(10135436-10135532)
chr1 (418-471)||(25661844-25661897)
chr1 (409-473)||(33301199-33301264)
chr1 (411-473)||(12260009-12260072)
chr1 (387-473)||(19799032-19799118)
chr1 (377-456)||(25855151-25855229)
chr1 (387-473)||(39588386-39588472)
chr1 (377-473)||(10140069-10140165)
chr1 (377-469)||(40165960-40166052)
chr1 (376-473)||(47455405-47455502)
chr1 (409-473)||(16649632-16649696)
chr1 (445-488)||(28858067-28858110)
chr1 (334-364)||(28858159-28858189)
chr1 (420-473)||(51041482-51041535)
chr1 (375-472)||(2290788-2290885)
[»] chr3 (35 HSPs)
chr3 (334-475)||(48432346-48432486)
chr3 (336-488)||(48435832-48435983)
chr3 (334-488)||(4662120-4662275)
chr3 (334-474)||(16982930-16983071)
chr3 (377-473)||(23666142-23666238)
chr3 (377-473)||(24038390-24038486)
chr3 (388-473)||(39775747-39775832)
chr3 (377-473)||(3418973-3419069)
chr3 (377-473)||(3672564-3672660)
chr3 (377-473)||(3692596-3692692)
chr3 (377-473)||(7571237-7571333)
chr3 (409-473)||(8883179-8883244)
chr3 (409-473)||(12965892-12965957)
chr3 (377-473)||(18467203-18467299)
chr3 (377-472)||(3033622-3033717)
chr3 (335-471)||(28243530-28243665)
chr3 (377-473)||(758387-758483)
chr3 (377-473)||(8887908-8888004)
chr3 (377-472)||(12112661-12112756)
chr3 (377-457)||(29350218-29350297)
chr3 (377-471)||(3657261-3657355)
chr3 (422-488)||(32474684-32474751)
chr3 (391-473)||(55431307-55431389)
chr3 (369-471)||(21100036-21100137)
chr3 (377-473)||(8069658-8069753)
chr3 (377-473)||(14438714-14438810)
chr3 (387-473)||(20520042-20520128)
chr3 (377-473)||(18471986-18472081)
chr3 (377-473)||(49971443-49971539)
chr3 (418-472)||(1641092-1641147)
chr3 (420-473)||(19276939-19276993)
chr3 (409-471)||(25726815-25726877)
chr3 (409-473)||(12971652-12971717)
chr3 (433-473)||(23661483-23661524)
chr3 (377-450)||(27708856-27708928)
[»] chr5 (35 HSPs)
chr5 (334-475)||(18265522-18265664)
chr5 (334-482)||(1286276-1286422)
chr5 (377-473)||(556675-556771)
chr5 (377-473)||(561447-561543)
chr5 (377-473)||(3665912-3666008)
chr5 (377-473)||(26667252-26667348)
chr5 (377-473)||(26938849-26938945)
chr5 (377-473)||(29167992-29168088)
chr5 (409-473)||(32461568-32461633)
chr5 (377-473)||(35679894-35679989)
chr5 (377-473)||(7451738-7451834)
chr5 (377-473)||(10759839-10759934)
chr5 (409-488)||(11981284-11981362)
chr5 (409-473)||(12103036-12103101)
chr5 (336-471)||(25215247-25215381)
chr5 (336-471)||(25279398-25279532)
chr5 (377-473)||(36942284-36942380)
chr5 (377-473)||(42001414-42001510)
chr5 (377-472)||(12102851-12102946)
chr5 (409-488)||(36423648-36423728)
chr5 (387-473)||(36428699-36428785)
chr5 (387-473)||(39523039-39523125)
chr5 (377-473)||(12045158-12045254)
chr5 (409-473)||(12501918-12501983)
chr5 (409-473)||(36937530-36937595)
chr5 (377-473)||(37248814-37248910)
chr5 (409-473)||(40147906-40147971)
chr5 (377-473)||(41996645-41996741)
chr5 (377-488)||(37652834-37652945)
chr5 (387-473)||(39518400-39518486)
chr5 (387-472)||(6155439-6155524)
chr5 (418-473)||(6514620-6514676)
chr5 (409-473)||(12041951-12042016)
chr5 (413-473)||(15414900-15414961)
chr5 (409-473)||(41587179-41587244)
[»] chr4 (35 HSPs)
chr4 (334-488)||(16595938-16596094)
chr4 (334-488)||(33722924-33723077)
chr4 (334-475)||(15020483-15020625)
chr4 (346-475)||(20513055-20513184)
chr4 (330-475)||(40684848-40684993)
chr4 (369-475)||(2575273-2575379)
chr4 (377-473)||(5271438-5271534)
chr4 (377-473)||(13522011-13522107)
chr4 (377-473)||(31269014-31269110)
chr4 (377-473)||(31273501-31273597)
chr4 (368-488)||(42758759-42758879)
chr4 (377-473)||(37259896-37259992)
chr4 (334-471)||(55081724-55081854)
chr4 (387-482)||(33468983-33469078)
chr4 (387-473)||(37264583-37264669)
chr4 (409-469)||(8030499-8030560)
chr4 (377-473)||(16421009-16421105)
chr4 (409-473)||(31765897-31765962)
chr4 (377-472)||(13059390-13059485)
chr4 (387-488)||(12878229-12878330)
chr4 (387-488)||(55251710-55251810)
chr4 (409-473)||(12823914-12823979)
chr4 (412-488)||(19106633-19106710)
chr4 (343-475)||(39991894-39992027)
chr4 (409-472)||(5928239-5928303)
chr4 (387-473)||(8693701-8693787)
chr4 (377-473)||(13065787-13065883)
chr4 (377-469)||(19906231-19906323)
chr4 (409-473)||(31729406-31729471)
chr4 (387-467)||(51696992-51697072)
chr4 (387-457)||(33463392-33463461)
chr4 (420-472)||(16953107-16953160)
chr4 (387-456)||(48276681-48276749)
chr4 (377-473)||(51697897-51697993)
chr4 (412-457)||(52691091-52691136)
[»] chr8 (32 HSPs)
chr8 (337-475)||(19954211-19954350)
chr8 (334-472)||(4544271-4544410)
chr8 (340-471)||(19949760-19949892)
chr8 (334-475)||(34517179-34517318)
chr8 (334-488)||(2469910-2470065)
chr8 (335-475)||(27236356-27236497)
chr8 (377-473)||(1807452-1807548)
chr8 (387-473)||(31449885-31449971)
chr8 (377-473)||(33416527-33416623)
chr8 (377-473)||(44925942-44926038)
chr8 (378-473)||(40125904-40125999)
chr8 (411-473)||(17953892-17953955)
chr8 (387-473)||(34118456-34118542)
chr8 (387-473)||(36683569-36683655)
chr8 (361-473)||(19166597-19166710)
chr8 (409-473)||(15875687-15875752)
chr8 (377-473)||(17025915-17026011)
chr8 (377-473)||(17556407-17556503)
chr8 (377-473)||(18876386-18876481)
chr8 (334-431)||(30777026-30777122)
chr8 (377-457)||(40130722-40130801)
chr8 (405-484)||(20072105-20072184)
chr8 (377-470)||(4238337-4238430)
chr8 (377-473)||(24090607-24090703)
chr8 (409-472)||(2965641-2965705)
chr8 (387-470)||(4243076-4243159)
chr8 (409-473)||(1910988-1911053)
chr8 (377-473)||(28559673-28559769)
chr8 (418-473)||(43302737-43302794)
chr8 (406-476)||(7145824-7145894)
chr8 (377-473)||(23548651-23548747)
chr8 (418-473)||(29220284-29220340)
[»] scaffold0018 (1 HSPs)
scaffold0018 (339-475)||(171732-171869)
[»] chr7 (24 HSPs)
chr7 (334-472)||(6898376-6898514)
chr7 (334-471)||(29478176-29478314)
chr7 (374-472)||(1289353-1289451)
chr7 (377-473)||(9650986-9651082)
chr7 (387-473)||(4579498-4579584)
chr7 (409-482)||(8268304-8268378)
chr7 (409-473)||(8076061-8076126)
chr7 (409-473)||(23866079-23866144)
chr7 (377-473)||(26341179-26341275)
chr7 (377-473)||(4930213-4930309)
chr7 (409-473)||(23246952-23247017)
chr7 (377-473)||(44510696-44510792)
chr7 (334-475)||(23616399-23616544)
chr7 (387-473)||(27238232-27238318)
chr7 (409-473)||(12254090-12254155)
chr7 (409-473)||(42627216-42627281)
chr7 (422-473)||(6591002-6591054)
chr7 (387-469)||(44423160-44423242)
chr7 (377-482)||(3357642-3357747)
chr7 (420-475)||(25832652-25832708)
chr7 (387-473)||(13314255-13314341)
chr7 (377-443)||(10388415-10388480)
chr7 (387-457)||(25543398-25543467)
chr7 (377-473)||(29150914-29151010)
[»] chr6 (25 HSPs)
chr6 (334-478)||(35129566-35129709)
chr6 (334-475)||(14041627-14041768)
chr6 (336-476)||(32815079-32815220)
chr6 (377-473)||(6407879-6407975)
chr6 (387-472)||(29892281-29892366)
chr6 (409-473)||(11570768-11570833)
chr6 (376-488)||(12688950-12689062)
chr6 (409-488)||(33687607-33687687)
chr6 (412-473)||(21309045-21309107)
chr6 (377-473)||(2700125-2700221)
chr6 (377-469)||(19674293-19674385)
chr6 (418-473)||(16836175-16836231)
chr6 (334-397)||(7499228-7499291)
chr6 (387-473)||(11614111-11614197)
chr6 (420-473)||(25316585-25316639)
chr6 (420-473)||(26204079-26204133)
chr6 (417-473)||(17964578-17964635)
chr6 (387-469)||(8747772-8747854)
chr6 (420-475)||(12714243-12714298)
chr6 (386-428)||(21795720-21795762)
chr6 (409-457)||(11428054-11428103)
chr6 (445-474)||(14775632-14775661)
chr6 (445-474)||(29610934-29610963)
chr6 (334-363)||(29610986-29611015)
chr6 (409-457)||(13736714-13736762)
[»] scaffold0352 (1 HSPs)
scaffold0352 (377-473)||(7084-7180)
[»] scaffold0182 (1 HSPs)
scaffold0182 (377-473)||(9906-10002)
[»] scaffold0012 (1 HSPs)
scaffold0012 (409-473)||(166105-166170)
[»] scaffold0002 (2 HSPs)
scaffold0002 (377-473)||(4054-4150)
scaffold0002 (425-473)||(443963-444011)
[»] scaffold0054 (1 HSPs)
scaffold0054 (387-473)||(25389-25475)
[»] scaffold0057 (1 HSPs)
scaffold0057 (413-473)||(35649-35710)
[»] scaffold0045 (1 HSPs)
scaffold0045 (377-471)||(83046-83140)
[»] scaffold0128 (1 HSPs)
scaffold0128 (415-471)||(13289-13346)
[»] scaffold2020 (1 HSPs)
scaffold2020 (386-473)||(360-447)
[»] scaffold0009 (1 HSPs)
scaffold0009 (386-473)||(165048-165135)


Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 44957929 - 44957441
Alignment:
Q  1 tgcttgcctttgatgagcacatttcctttcctactctctctgatggaatagtccaattatctgcaaatctaatcttggttttttctggtttcatcaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44957929 tgcttgcctttgatgagcacatttcctttcctactctctctgatggaatggtccaattatctgcaaatctaatcttggttttttctggtttcatcaaaat 44957830  T
Q  101 attataagccattctttatgacttgtcatatgatttcaacatcttgtttccaaataccaatcatcagtgttacccaattcataattagttgttgatatga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44957829 attataagccattctttatgacttgtcatatgatttcaacatctcgtgtccaaataccaatcatcagtgttacccaattcataattagttgttgatatga 44957730  T
Q  201 gaagaatatgattatatccataatcactttcatcttcaaccatgtaagcttcaacatttgttttgcctgatcctctaggaacatttttgttttgcacaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44957729 gaagaatatgattatatccataatcactttcatcttcaaccatgtaagcttcaacatttgttttgcctgatcctctaggaacatttttgttttgcacaca 44957630  T
Q  301 tttgcaaaatgtccttatctctaacaatcataa-tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgag 399  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  44957629 tttgcaaaatgtccatatctctaacaatcataactgttggaacaatagtcaaaattagttaaaaaattatttttgtcaccgaagagattactaggctgag 44957530  T
Q  400 tcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaaccacgacatctccagaataa 488  Q
    ||| ||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  44957529 tcatggactaggtcgttctctttaagacgttttgtggcactgcaaaaaattgtgcaagcagactatcaaccacgacatctccaggataa 44957441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 334 - 469
Target Start/End: Complemental strand, 13060526 - 13060392
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    ||||| ||||||||||||||||||||||||| |  ||| |||||||||||| |||| |||||||||||||||| |||||||||||| |||||||| ||||    
T  13060526 tgttgaaacaatagtcaaaattagttaaaaa-tattttatgtcaccgaagacattattaggctgagtcacggactaggtcgctttcattaagacgatttg 13060428  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaac 469  Q
    | |||| ||||||||||||| ||| |||||||||||    
T  13060427 ttgcaccgccaaaaattgtgaaagaagactatcaac 13060392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 334 - 475
Target Start/End: Original strand, 14104528 - 14104668
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    ||||||||||||||||||||||||||||||| |  ||| ||||| |||| | |||||||||||||||| |||| ||||||||| |||||||||||||| |    
T  14104528 tgttggaacaatagtcaaaattagttaaaaa-tattttctgtcatcgaacaaattactaggctgagtcgcggactaggtcgctctctttaagacgtttcg 14104626  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    || ||||||  |||||||||||| || |||||||||||||||    
T  14104627 tgtcactgctcaaaattgtgcaaacaaactatcaaccacgac 14104668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 1935108 - 1935012
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  1935108 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 1935012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 10160839 - 10160743
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  10160839 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 10160743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 29677371 - 29677457
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgc-aagcagactatcaaccacg 473  Q
    |||||||| ||||||||| || | |||||| |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  29677371 ttactaggttgagtcacg-atcatgtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaagcagactatcaaccacg 29677457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 473
Target Start/End: Complemental strand, 7737967 - 7737870
Alignment:
Q  376 caccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| | |||||||| ||||||||| |  | |||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  7737967 caccgaagttgttactaggttgagtcacg-accatgtcgctctctttaagaagttttgtggcactgcccaaaattgtgcaagacagactatcaaccacg 7737870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 9180839 - 9180743
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||    
T  9180839 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacg 9180743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 412 - 488
Target Start/End: Original strand, 12796939 - 12797016
Alignment:
Q  412 tcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacgacatctccagaataa 488  Q
    ||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| | ||||||| ||||    
T  12796939 tcgctctctttaagacgttttgtggcactgcccaaaattgttcaagacagactatcaaccacgccgtctccaggataa 12797016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 30650909 - 30651005
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  || ||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  30650909 accgaagttgttactaggttgagtcacg-accagatcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 30651005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 409 - 488
Target Start/End: Complemental strand, 25478381 - 25478301
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacgacatctccagaataa 488  Q
    |||||||| |||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||| |  |||||||||||    
T  25478381 aggtcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccagaataa 25478301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 488
Target Start/End: Original strand, 30631559 - 30631670
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacgac 475  Q
    ||||||| | |||||||| ||||||||| |||||||| || ||||||| || ||| |||||| ||||||||||||||||||  ||||||||||||||| |    
T  30631559 accgaagttgttactaggttgagtcacg-attaggtcactctctttaaaacttttcgtggcattgccaaaaattgtgcaagaaagactatcaaccacgcc 30631657  T
Q  476 atctccagaataa 488  Q
    | |||||| ||||    
T  30631658 acctccaggataa 30631670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 488
Target Start/End: Original strand, 31326719 - 31326830
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacgac 475  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||||||||||  || ||||||| |||||||||||| ||||||||||||||||| |    
T  31326719 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcatgccactgcccaaaattgtgcaaggcagactatcaaccacgcc 31326817  T
Q  476 atctccagaataa 488  Q
    | |||||| ||||    
T  31326818 acctccaggataa 31326830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 9189918 - 9189822
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||| ||| |||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||    
T  9189918 accgaagttgttactaggttgagtcacg-accaggttgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacg 9189822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 18344442 - 18344507
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||    
T  18344442 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactattaaccacg 18344507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 19892581 - 19892485
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||||||||||  |||||||| | ||||||||||||  ||||||||||||||||    
T  19892581 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcctggcactgtccaaaattgtgcaacacagactatcaaccacg 19892485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 28603278 - 28603374
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||| |||||| ||| ||||| | ||||||||||||| ||||||||||||||||    
T  28603278 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaaaacgtttcgtgacactgtccaaaattgtgcaagacagactatcaaccacg 28603374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 471
Target Start/End: Original strand, 29677757 - 29677841
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaacca 471  Q
    |||||||| ||||||||| |  |||||||| || ||||||| ||| |||||||||||||||||||||||| ||| |||||||||||    
T  29677757 ttactaggttgagtcacg-accaggtcgctctcattaagacatttagtggcactgccaaaaattgtgcaaggcaaactatcaacca 29677841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 30658274 - 30658339
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| |||||||||||||| |||||||| |  |||||||||||| |||||||||||||||||    
T  30658274 aggtcgctctctttaagacgtttcgtggcactactcaaaattgtgcaaggcagactatcaaccacg 30658339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 471
Target Start/End: Complemental strand, 19578495 - 19578435
Alignment:
Q  412 tcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaacca 471  Q
    ||||| ||||||||||||||||||||||| || |||||||||||| | |||||||||||||    
T  19578495 tcgctctctttaagacgttttgtggcactacctaaaattgtgcaaggaagactatcaacca 19578435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 42926876 - 42926778
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagac--gttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| || ||| |||| ||||||||||  |||| ||||||||||| |||||||||||| | |||||||||||||||    
T  42926876 accgaagttgttactaggttgagtcacg-atcaggccgctctctttaagacacgtttcgtggcactgcccaaaattgtgcaaggtagactatcaaccacg 42926778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 25497430 - 25497344
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||| ||  ||||||| ||| ||||||||| ||||||||||||||||    
T  25497430 ttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtaacactgcccaaatttgtgcaagtcagactatcaaccacg 25497344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 35601933 - 35601998
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| | |||||||||||| ||||||||| | ||||||||||||| |||| |||||||||||    
T  35601933 aggtcgctctttttaagacgtttcgtggcactgtccaaaattgtgcaagacagagtatcaaccacg 35601998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 35639081 - 35639016
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| | |||||||||||| ||||||||||| ||||||||||||| |||  |||||||||||    
T  35639081 aggtcgctctttttaagacgtttcgtggcactgcccaaaattgtgcaagacagcgtatcaaccacg 35639016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 471
Target Start/End: Complemental strand, 21524080 - 21523985
Alignment:
Q  376 caccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaacca 471  Q
    ||||||||| ||| ||||| |||||| || | ||||||  | ||||||| ||  || ||||||||||| ||| |||||||||||||||| ||||||    
T  21524080 caccgaagaaatttctaggatgagtcgcgtactaggtccttctctttaaaactattcgtggcactgcccaaatttgtgcaagcagactaacaacca 21523985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 21523803 - 21523739
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||| ||| ||||||| |||||| ||||||||||| |||||||||||| | |||||||||||||||    
T  21523803 aggttgctatctttaa-acgtttcgtggcactgcccaaaattgtgcaagggagactatcaaccacg 21523739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 41559178 - 41559078
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    ||||||||||| | | |||||||||| ||||||  |||  |||| | |||| |||| |||| |||||| ||||||| |||||| ||||||| ||||||||    
T  41559178 tgttggaacaaaatttaaaattagttcaaaaatattttcagtcatcaaagagattattagg-tgagtcgcggattatgtcgctctctttaaaacgttttg 41559080  T
Q  434 tg 435  Q
    ||    
T  41559079 tg 41559078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 19094610 - 19094531
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag 457  Q
    ||||||| | ||| |||| ||||||||| || |||||||| || |||| ||||||| ||| |||||| |||||||||||||    
T  19094610 accgaagttgttattaggttgagtcacg-atcaggtcgctctccttaaaacgttttttggtactgcccaaaattgtgcaag 19094531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 40847670 - 40847614
Alignment:
Q  418 tctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||||||||||||||||||||   ||| |||||||| ||| |||||||||||||    
T  40847670 tctttaagacgttttgtggcactgttcaaagttgtgcaaggcaaactatcaaccacg 40847614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 339 - 475
Target Start/End: Original strand, 36724650 - 36724786
Alignment:
Q  339 gaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggca 438  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||    
T  36724650 gaacaatagtcaaaattagttaaaaaaatatttttgtcaccgaagagattactaggctgagtcatggactaggtcgctctctttaagacgttttatggca 36724749  T
Q  439 ctgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    || || |||||||||||||||||| ||||||||||||    
T  36724750 ctacccaaaattgtgcaagcagacaatcaaccacgac 36724786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 334 - 475
Target Start/End: Original strand, 12906091 - 12906232
Alignment:
Q  334 tgttggaacaatagtcaaaa-ttagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    |||||||||||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||| |||| || | ||||||||| ||||||||||||||     
T  12906091 tgttggaacaatagtcaaaaattagttaaaaaat-atttttgttaccgaagagattactaggcttagtcgcgaactaggtcgctctctttaagacgtttc 12906189  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  12906190 gtggcactgcccaaaattgtgcaagcagactatcaaccacgac 12906232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 334 - 488
Target Start/End: Complemental strand, 27761996 - 27761843
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    |||||||||||||||||| |||||||||||||| ||||||||||  ||||||||||||||| |||||| | || |||||| || ||||||| |||||| |    
T  27761996 tgttggaacaatagtcaacattagttaaaaaat-atttttgtcattgaagatattactaggttgagtcgcagactaggtcactctctttaaaacgtttcg 27761898  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaaccacgacatctccagaataa 488  Q
    |||||||| | ||||||||||||||||||||||||||||||| || |||| ||||    
T  27761897 tggcactgtccaaaattgtgcaagcagactatcaaccacgacgtccccaggataa 27761843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 333 - 475
Target Start/End: Original strand, 31063892 - 31064034
Alignment:
Q  333 atgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||||| ||||||||||||||||  ||| ||||||||| ||||||||| ||||     
T  31063892 atgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgtggactaggtcgctctctttaagaggtttc 31063991  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    ||||||||  | |||||||| |||||| |||||||||||||||    
T  31063992 gtggcactttccaaaattgttcaagcaaactatcaaccacgac 31064034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 341 - 468
Target Start/End: Original strand, 32987185 - 32987311
Alignment:
Q  341 acaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcact 440  Q
    |||||||||||||||||||||||| |  ||||||||| |||||| ||||||| |||||||| |||| |||||| || ||||||||| |||||||||||||    
T  32987185 acaatagtcaaaattagttaaaaa-tagtttttgtcatcgaagagattactaagctgagtcgcggactaggtcactctctttaagatgttttgtggcact 32987283  T
Q  441 gccaaaaattgtgcaagcagactatcaa 468  Q
    ||| ||||||||||||||||||||||||    
T  32987284 gcctaaaattgtgcaagcagactatcaa 32987311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 333 - 475
Target Start/End: Complemental strand, 33381081 - 33380938
Alignment:
Q  333 atgttggaacaatagtcaaaattagttaaaaa-atcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttt 431  Q
    |||||||||||||||||||||||||||||||| ||  ||||| |||| ||| | ||||||||||||||||  | | ||||||||| ||||||||||||||    
T  33381081 atgttggaacaatagtcaaaattagttaaaaatattttttttatcacagaaaagattactaggctgagtcgtgtactaggtcgctctctttaagacgttt 33380982  T
Q  432 tgtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
     ||| ||||||  |||||||||||||||||||||||||||||||    
T  33380981 cgtgacactgctcaaaattgtgcaagcagactatcaaccacgac 33380938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 336 - 488
Target Start/End: Complemental strand, 24159954 - 24159803
Alignment:
Q  336 ttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtg 435  Q
    |||||| |||||||||||||||||||||| |  ||| | |||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| ||     
T  24159954 ttggaataatagtcaaaattagttaaaaa-tattttctatcaccgaagagattactaggctgagtcgcggactaggtcgctctctttaagacgtttcgta 24159856  T
Q  436 gcactgccaaaaattgtgcaagcagactatcaaccacgacatctccagaataa 488  Q
      |||||| ||||||||||||||||||||||||| ||||| || |||| ||||    
T  24159855 atactgcccaaaattgtgcaagcagactatcaacgacgacgtccccaggataa 24159803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 333 - 475
Target Start/End: Complemental strand, 23193382 - 23193240
Alignment:
Q  333 atgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    ||||||||||||||||||||||||||||||||    ||| ||||| |||||| ||||||| |||||||| |||| ||||||||| ||| ||||||||||     
T  23193382 atgttggaacaatagtcaaaattagttaaaaatatttttctgtcatcgaagagattactacgctgagtcgcggactaggtcgctctctataagacgtttc 23193283  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
     ||||||  || |||||| ||||||||||||||||||||||||    
T  23193282 atggcacaacccaaaattatgcaagcagactatcaaccacgac 23193240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 334 - 473
Target Start/End: Complemental strand, 2493976 - 2493837
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    ||||||||||||| |||||||||||||||||    | | ||  |||||||| ||||||||| |||||| |  | ||||||||| |||||||||||||| |    
T  2493976 tgttggaacaataatcaaaattagttaaaaatatttatctgcaaccgaagagattactaggttgagtcgcaaactaggtcgctctctttaagacgtttcg 2493877  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaaccacg 473  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  2493876 tggcactgcccaaaattgtgcaagcaaactatcaaccacg 2493837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 376 - 473
Target Start/End: Complemental strand, 47451341 - 47451244
Alignment:
Q  376 caccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||  |||||||||| ||||||||| |  |||||||| ||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  47451341 caccgaaattattactaggttgagtcacg-accaggtcgctctctttaagacgtttcatggcactgccaaaaattgtgcaagacagactatcaaccacg 47451244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 23192932 - 23192836
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||    
T  23192932 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtacaaggcagactatcaaccacg 23192836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 26927837 - 26927741
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| | || |||||| |||||||||||||| |||||| |||| |||||||||||| |||||||||||||||||    
T  26927837 accgaagttgttactaggttgagtcacg-actaagtcgctctctttaagacgtttcgtggcattgcccaaaattgtgcaaggcagactatcaaccacg 26927741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 470
Target Start/End: Original strand, 3094094 - 3094187
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaacc 470  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||||||||||  |||||||||| |||||||||||| ||||||||||||||    
T  3094094 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaacc 3094187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 488
Target Start/End: Complemental strand, 18784653 - 18784553
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacgacatctccagaa 485  Q
    |||||||| ||||||||| || |||||||| | |||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||| |  ||||||||    
T  18784653 ttactaggttgagtcacg-atcaggtcgctct-tttaagacatttcgtggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcctccagaa 18784556  T
Q  486 taa 488  Q
    |||    
T  18784555 taa 18784553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 10135436 - 10135532
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| |||||||| || |||||||||||| |||||| ||||||||||    
T  10135436 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactacctaaaattgtgcaaggcagacaatcaaccacg 10135532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 25661897 - 25661844
Alignment:
Q  418 tctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaacca 471  Q
    ||||||||||||||||||||||| || ||||||||||||| |||||||||||||    
T  25661897 tctttaagacgttttgtggcactacccaaaattgtgcaagtagactatcaacca 25661844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 33301264 - 33301199
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||| | |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  33301264 aggtcgttctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 33301199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 473
Target Start/End: Original strand, 12260009 - 12260072
Alignment:
Q  411 gtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||    
T  12260009 gtcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaagacagactatcaaccacg 12260072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 19799118 - 19799032
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| ||||||||| || || ||||| |||||||||||||| ||||||||  | ||||||||||||| ||||||||||||||||    
T  19799118 ttactaggttgagtcacg-atcagatcgctctctttaagacgtttcgtggcactatccaaaattgtgcaagacagactatcaaccacg 19799032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 456
Target Start/End: Original strand, 25855151 - 25855229
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa 456  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  25855151 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaa 25855229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 39588472 - 39588386
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| | ||||||| || |||||||| |||||||||||||| ||||||||| | ||||||||||||| ||||||||| ||||||    
T  39588472 ttactaggttaagtcacg-atcaggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaagacagactatctaccacg 39588386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 10140069 - 10140165
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| || |||||||| ||||||| |||||| |||||||| |  |||||||||||| |||||| ||||||||||    
T  10140069 accgaagttgttactaggttgagtcacg-atcaggtcgctctctttaacacgtttcgtggcactactcaaaattgtgcaaggcagacaatcaaccacg 10140165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 469
Target Start/End: Original strand, 40165960 - 40166052
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaac 469  Q
    ||||||| | |||||||| ||||||||| |  | |||||| |||||||||||||| ||||||||||| |||||||||||| |||||||| ||||    
T  40165960 accgaagttgttactaggttgagtcacg-accatgtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactaacaac 40166052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 473
Target Start/End: Complemental strand, 47455502 - 47455405
Alignment:
Q  376 caccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| | ||| |||| ||||||||| |  |||||||| |||||||||||||| |||||| || | ||||||||||||| |||| |||||||||||    
T  47455502 caccgaagttgttattaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcaatgtccaaaattgtgcaagacagattatcaaccacg 47455405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 16649696 - 16649632
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||| | |||||||||||||  |||||||||||||||    
T  16649696 aggtcgctctctttaagacgttt-gtggcactgtccaaaattgtgcaagatagactatcaaccacg 16649632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 488
Target Start/End: Complemental strand, 28858110 - 28858067
Alignment:
Q  445 aaaattgtgcaagcagactatcaaccacgacatctccagaataa 488  Q
    ||||||||||||||||||||||||||||||| || |||| ||||    
T  28858110 aaaattgtgcaagcagactatcaaccacgacgtccccaggataa 28858067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 28858189 - 28858159
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaa 364  Q
    |||||||||||||||||||||||||||||||    
T  28858189 tgttggaacaatagtcaaaattagttaaaaa 28858159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 51041535 - 51041482
Alignment:
Q  420 tttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||||||| |||||||||||  ||||||||||| |||||||||||||||||    
T  51041535 tttaagacgtttcgtggcactgcc-caaattgtgcaaggcagactatcaaccacg 51041482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 472
Target Start/End: Original strand, 2290788 - 2290885
Alignment:
Q  375 tcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaaccac 472  Q
    |||| ||||||||||||| | |||||| || |||||| || |||| ||||||| ||||||   |||  | |||||| | |||||||||||||||||||    
T  2290788 tcactgaagatattactatgttgagtcgcgtattaggccgttttcgttaagacattttgtaatactatctaaaattattcaagcagactatcaaccac 2290885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 334 - 475
Target Start/End: Original strand, 48432346 - 48432486
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    ||||| |||||||||||||||||||||||||  | ||| |||||||||||| |||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  48432346 tgttgcaacaatagtcaaaattagttaaaaatac-tttctgtcaccgaagagattactaggctgagtcgcggactaggtcgctctctttaagacgttttg 48432444  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    |||||||||| ||||||||| || ||||||||||||||||||    
T  48432445 tggcactgcccaaaattgtgaaaacagactatcaaccacgac 48432486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 336 - 488
Target Start/End: Complemental strand, 48435983 - 48435832
Alignment:
Q  336 ttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtg 435  Q
    ||||||||||| ||||||||||||||||| |  |||  ||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||    
T  48435983 ttggaacaatactcaaaattagttaaaaa-tattttccgtcaccgaagagattactaggctgagtcgcggactaggtcgctctctttaagacgtttcgtg 48435885  T
Q  436 gcactgccaaaaattgtgcaagcagactatcaaccacgacatctccagaataa 488  Q
     |||||   ||||| ||||||||||||||||||||||||| || |||| ||||    
T  48435884 acactgttcaaaatagtgcaagcagactatcaaccacgacgtccccaggataa 48435832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 334 - 488
Target Start/End: Original strand, 4662120 - 4662275
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaa-atcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    |||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||||| | ||||||||  ||| ||||||||| ||| ||||||||||     
T  4662120 tgttggaataatagtcaaaattagttaaaaatattttttttgtcaccgaagagattaccacgctgagtcgtggactaggtcgctctctctaagacgttta 4662219  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacgacatctccagaataa 488  Q
    |||| | |||| |||||| |||||||||||||||||||| ||| || |||| ||||    
T  4662220 gtggaaatgcccaaaattatgcaagcagactatcaaccatgacgtccccaggataa 4662275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 334 - 474
Target Start/End: Original strand, 16982930 - 16983071
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatc-atttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    ||||||||||||||||||||||||||||||||   | |||||||||||||||||||| |||||||| || |||| ||||||||| | ||||||||||||     
T  16982930 tgttggaacaatagtcaaaattagttaaaaaaaataattttgtcaccgaagatattagtaggctgattcgcggactaggtcgctctttttaagacgtttc 16983029  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacga 474  Q
     || ||||| | ||||||||| ||| ||| ||||||||||||    
T  16983030 atgacactgtccaaaattgtgaaagaagaatatcaaccacga 16983071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 23666238 - 23666142
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  23666238 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 23666142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 24038486 - 24038390
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  24038486 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 24038390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 39775832 - 39775747
Alignment:
Q  388 tactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  39775832 tactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 39775747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 3418973 - 3419069
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  | |||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  3418973 accgaagttgttactaggttgagtcacg-accaagtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 3419069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 3672564 - 3672660
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||||||||||  |||||||||| |||||||||||| |||||||||||||||||    
T  3672564 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacg 3672660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 3692596 - 3692692
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||||||||||  |||||||||| |||||||||||| |||||||||||||||||    
T  3692596 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacg 3692692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 7571333 - 7571237
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||    
T  7571333 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaatcacg 7571237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 8883179 - 8883244
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  8883179 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 8883244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 12965957 - 12965892
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  12965957 aggtcgctctctttaagacgttttatggcactgcccaaaattgtgcaagacagactatcaaccacg 12965892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 18467203 - 18467299
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||    
T  18467203 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactattaaccacg 18467299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 472
Target Start/End: Original strand, 3033622 - 3033717
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccac 472  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||    
T  3033622 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccac 3033717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 471
Target Start/End: Complemental strand, 28243665 - 28243530
Alignment:
Q  335 gttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgt 434  Q
    |||||||||| ||||||||||||||||||| | |||||||| ||  | ||  ||| |||  |||||| | || ||| || |||| ||||||||||||| |    
T  28243665 gttggaacaaaagtcaaaattagttaaaaa-taatttttgttacatacgagtttattagattgagtcgccgactagatcactttttttaagacgttttat 28243567  T
Q  435 ggcactgccaaaaattgtgcaagcagactatcaacca 471  Q
    ||||||| | ||||||| |||||||||||||||||||    
T  28243566 ggcactgtcgaaaattgcgcaagcagactatcaacca 28243530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 758483 - 758387
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  || ||||| |||||||||||||| |||||||| || |||||||||||| |||||||||||||||||    
T  758483 accgaagttgttactaggttgagtcacg-accagatcgctctctttaagacgtttcgtggcactacccaaaattgtgcaaggcagactatcaaccacg 758387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 8887908 - 8888004
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||||||||||||| |||||| | ||||||||||||| |||| |||||||||||    
T  8887908 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgttttgttgcactgtccaaaattgtgcaagacagattatcaaccacg 8888004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 472
Target Start/End: Complemental strand, 12112756 - 12112661
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccac 472  Q
    ||||||| | |||||||| ||| ||||| | ||||||||| |||||||||||||| ||||||||| | ||| ||||||||| |||||||||||||||    
T  12112756 accgaagttgttactaggttgaatcacg-actaggtcgctctctttaagacgtttcgtggcactgtccaaagttgtgcaagacagactatcaaccac 12112661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 29350218 - 29350297
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag 457  Q
    ||||||| | |||||||| ||||||||| |  | ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  29350218 accgaagttgttactaggttgagtcacg-accatgtcgctttctttaagacgtttcgtggcactgcccaaaattgtgcaag 29350297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 471
Target Start/End: Complemental strand, 3657355 - 3657261
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaacca 471  Q
    ||||||| | |||||| | ||||||||| ||||| ||||| |||||||||||||| |||||||||   ||||||||||||| ||||||||||||||    
T  3657355 accgaagttgttactatgttgagtcacg-attagatcgctctctttaagacgtttcgtggcactgttcaaaattgtgcaagacagactatcaacca 3657261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 488
Target Start/End: Complemental strand, 32474751 - 32474684
Alignment:
Q  422 taagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacgacatctccagaataa 488  Q
    |||||||||| ||||||||||| ||||||||||||| |||||||||||||||| | ||||||| ||||    
T  32474751 taagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgtctccaggataa 32474684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 55431307 - 55431389
Alignment:
Q  391 taggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||| ||||||||| || |||||||| |||||||||||||| ||| ||||| |||||||| ||||| |||||||||||||||||    
T  55431307 taggttgagtcacg-atcaggtcgctctctttaagacgtttcgtgacactgtcaaaaattatgcaaggcagactatcaaccacg 55431389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 471
Target Start/End: Original strand, 21100036 - 21100137
Alignment:
Q  369 tttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaa 468  Q
    |||| ||||||||||| | |||||||||||||| ||||||| |||||| | |||||||| |||  ||  | ||||||||||||||||| |||||||| ||    
T  21100036 ttttggtcaccgaagagactactaggctgagtcgcggattatgtcgctat-tttaagacttttcatgaaaatgccaaaaattgtgcaaacagactattaa 21100134  T
Q  469 cca 471  Q
    |||    
T  21100135 cca 21100137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 8069658 - 8069753
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||| |  |||||||||||| ||||||||||||||||    
T  8069658 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgtc-caaattgtgcaagacagactatcaaccacg 8069753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 14438810 - 14438714
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||  |||||||||||||| |||||||| || |||||||||||| |||||| ||||||||||    
T  14438810 accgaagttgttactaggttgagtcacg-accaggtcgccctctttaagacgtttcgtggcactacccaaaattgtgcaaggcagacaatcaaccacg 14438714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 20520042 - 20520128
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| |  ||||| || |||||||||||||| ||||||||||| || ||||||||| | |||||||||||||||    
T  20520042 ttactaggttgagtcacg-accaggtcactctctttaagacgtttcgtggcactgcccaagattgtgcaagggagactatcaaccacg 20520128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 18471986 - 18472081
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||| || |||  ||||||||||| |||||||||||| |||||||||||||||||    
T  18471986 accgaagttgttactaggttgagtcacg-accaggtcgctctctttacgatgttc-gtggcactgcctaaaattgtgcaaggcagactatcaaccacg 18472081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 49971539 - 49971443
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||| | |||||||||||||| ||||||||  | |||||||||||| |||||||||||| ||||    
T  49971539 accgaagttgttactaggttgagtcacg-accaggtcgatctctttaagacgtttcgtggcactatccaaaattgtgcaaggcagactatcaatcacg 49971443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 472
Target Start/End: Complemental strand, 1641147 - 1641092
Alignment:
Q  418 tctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccac 472  Q
    |||||||||||||||| | ||||||||||||||||  ||| |||||||||||||||    
T  1641147 tctttaagacgttttgcgacactgccaaaaattgtaaaagacagactatcaaccac 1641092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 19276993 - 19276939
Alignment:
Q  420 tttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| ||||||||||||| | ||||||||| ||| ||||||||||||||||    
T  19276993 tttaagactttttgtggcactgtcgaaaattgtgtaagacagactatcaaccacg 19276939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 471
Target Start/End: Complemental strand, 25726877 - 25726815
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaacca 471  Q
    |||||||| |||||||||||||| | |||||| || | |||||||||| ||| ||||||||||    
T  25726877 aggtcgctctctttaagacgtttcgcggcactacccagaattgtgcaatcaggctatcaacca 25726815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 12971717 - 12971652
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||| || |||||||||||||| |||||| |||| ||||||||||||| |||| |||||| ||||    
T  12971717 aggtctctctctttaagacgtttcgtggcattgcccaaaattgtgcaagacagattatcaatcacg 12971652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 23661524 - 23661483
Alignment:
Q  433 gtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  23661524 gtggcactgcccaaaattgtgcaaggcagactatcaaccacg 23661483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 27708856 - 27708928
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaatt 450  Q
    ||||||| | |||||||| ||||||||| |  |||||| | |||||||||||||| ||||||||||| ||||||    
T  27708856 accgaagttgttactaggttgagtcacg-accaggtcgttctctttaagacgtttcgtggcactgcccaaaatt 27708928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 334 - 475
Target Start/End: Complemental strand, 18265664 - 18265522
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaa-atcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    ||||||||||||||||||||||||||||||  ||  ||| |||||||||||| |||||||||||||||  |||| ||||||||| |||||||||||||||    
T  18265664 tgttggaacaatagtcaaaattagttaaaagtattttttctgtcaccgaagagattactaggctgagtagcggactaggtcgctctctttaagacgtttt 18265565  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    ||| ||||||| |||||||||||| ||||||||||||||||||    
T  18265564 gtgacactgcctaaaattgtgcaatcagactatcaaccacgac 18265522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 334 - 482
Target Start/End: Complemental strand, 1286422 - 1286276
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    |||||||||||| |||||||||||||||||| |  ||| |||||||| ||| |||||||||||||||| |||| || | |||| ||||||||||  ||||    
T  1286422 tgttggaacaattgtcaaaattagttaaaaa-tattttctgtcaccggagagattactaggctgagtcgcggactatgccgctctctttaagac-atttg 1286325  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaaccacgacatctcca 482  Q
    ||||| |||| ||||||||||||  ||| ||| ||||||||| ||||||    
T  1286324 tggcattgccgaaaattgtgcaactagattattaaccacgacgtctcca 1286276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 556675 - 556771
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  556675 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 556771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 561447 - 561543
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  561447 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 561543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 3665912 - 3666008
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| | ||||||||| |||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  3665912 accgaagttgttactaggttgagtcacg-actaggtcgctctcttcaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 3666008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 26667252 - 26667348
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  26667252 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 26667348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 26938849 - 26938945
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  26938849 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 26938945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 29168088 - 29167992
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  29168088 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 29167992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 32461633 - 32461568
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  32461633 aggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaagacagactatcaaccacg 32461568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 35679989 - 35679894
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||| ||   |||||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  35679989 accgaagctgttactaggttgagtcatggc--aggtcgctctctttaagacgtttcgtggcactgtcaaaaattgtgcaaggcagactatcaaccacg 35679894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 7451738 - 7451834
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||    
T  7451738 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacg 7451834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 10759934 - 10759839
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| | |||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  10759934 accgaagttgttactaggttgagtcacg-accaggtcgctct-tttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 10759839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 488
Target Start/End: Complemental strand, 11981362 - 11981284
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacgacatctccagaataa 488  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||  |||||||||| |  |||||||||||    
T  11981362 aggtcgctttctttaagacgttttgtggcactgcccaaaattgtgcaagacaga--atcaaccacgccgcctccagaataa 11981284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 12103036 - 12103101
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  12103036 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 12103101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 471
Target Start/End: Complemental strand, 25215381 - 25215247
Alignment:
Q  336 ttggaacaatagtcaaaa-ttagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgt 434  Q
    ||||||||||||| |||| ||||||||||| |  | || ||||||||||| |||| | ||||||||| | || ||||||||| |||||||||| |||| |    
T  25215381 ttggaacaatagtaaaaagttagttaaaaagt--tgttggtcaccgaagagattatttggctgagtcgcagactaggtcgctctctttaagacattttat 25215284  T
Q  435 ggcactgccaaaaattgtgcaagcagactatcaacca 471  Q
    | || |||| ||||||||||||| | |||||||||||    
T  25215283 gacattgcctaaaattgtgcaagtatactatcaacca 25215247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 471
Target Start/End: Complemental strand, 25279532 - 25279398
Alignment:
Q  336 ttggaacaatagtcaaaa-ttagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgt 434  Q
    ||||||||||||| |||| ||||||||||| |  | || ||||||||||| |||| | ||||||||| | || ||||||||| |||||||||| |||| |    
T  25279532 ttggaacaatagtaaaaagttagttaaaaagt--tgttggtcaccgaagagattatttggctgagtcgcagactaggtcgctctctttaagacattttat 25279435  T
Q  435 ggcactgccaaaaattgtgcaagcagactatcaacca 471  Q
    | || |||| ||||||||||||| | |||||||||||    
T  25279434 gacattgcctaaaattgtgcaagtatactatcaacca 25279398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 36942380 - 36942284
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||||||||||  |||||||||| |||||||||||| |||||||||||||||||    
T  36942380 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacg 36942284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 42001414 - 42001510
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||    
T  42001414 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaagacagactatcaaccacg 42001510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 472
Target Start/End: Complemental strand, 12102946 - 12102851
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccac 472  Q
    ||||||| | |||||||| ||||||||| | ||||||||| |||||||||| ||||||||||||| | |||||||||||| | ||||||||||||||    
T  12102946 accgaagttgttactaggttgagtcacg-actaggtcgctctctttaagactttttgtggcactggccaaaattgtgcaaggaagactatcaaccac 12102851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 409 - 488
Target Start/End: Original strand, 36423648 - 36423728
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacgacatctccagaataa 488  Q
    |||||||| |||||||||||||| | ||||||||| |||||||||||| ||||||||||||||||| |  |||||||||||    
T  36423648 aggtcgctctctttaagacgtttcgcggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccagaataa 36423728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 36428699 - 36428785
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||||| || |||||| |||||||||||| |||||||||||||||||    
T  36428699 ttactaggttgagtcacg-accaggtcgctctctttaagacgttttgcggaactgcccaaaattgtgcaaggcagactatcaaccacg 36428785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 39523039 - 39523125
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||||    
T  39523039 ttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcaccgcccaaaattgtgcaagacagactatcaaccacg 39523125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 12045254 - 12045158
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||  |||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||    
T  12045254 accgaagttgttactaggttgagtcacg-accaggtcgccctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcgaccacg 12045158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 12501983 - 12501918
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgc-aagcagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||    
T  12501983 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaaacagactatcaaccacg 12501918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 36937595 - 36937530
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||||||||  |||||||||| |||||||||||| |||||||||||||||||    
T  36937595 aggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacg 36937530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 37248910 - 37248814
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||| ||| |||||||| || |||||||||||| |||||||||||||||||    
T  37248910 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacatttcgtggcactacctaaaattgtgcaaggcagactatcaaccacg 37248814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 40147906 - 40147971
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| ||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  40147906 aggtcgctctctttaagatgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 40147971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 41996645 - 41996741
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||| ||| |||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||    
T  41996645 accgaagttgttactaggttgagtcacg-accaggttgctctctttaagacgtttcgtggcactgcccaaaattgtgtaagacagactatcaaccacg 41996741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 488
Target Start/End: Complemental strand, 37652945 - 37652834
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacgac 475  Q
    ||||||| | ||| |||| ||||||||| || |||||||| |||||||||||||| ||| || || | |||||||||||| ||||||||||||||||| |    
T  37652945 accgaagttgttattaggttgagtcacg-atcaggtcgctctctttaagacgtttcgtgacattgtccaaaattgtgcaaggcagactatcaaccacgcc 37652847  T
Q  476 atctccagaataa 488  Q
    | |||||| ||||    
T  37652846 acctccaggataa 37652834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 39518400 - 39518486
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgca-agcagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||| ||| |||||||||||  |||||||||||||||||    
T  39518400 ttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcaccgcccaaaattgtgcatggcagactatcaaccacg 39518486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 472
Target Start/End: Complemental strand, 6155524 - 6155439
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccac 472  Q
    |||||||| ||||||||| || |||||||| |||||||||||||| ||||||||| | |||||| | |||| |||||||||||||||    
T  6155524 ttactaggttgagtcacg-atcaggtcgctctctttaagacgtttcgtggcactgtccaaaattttacaagacagactatcaaccac 6155439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 6514676 - 6514620
Alignment:
Q  418 tctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||    
T  6514676 tctttaagacgtttcgtggcactgcccaaaattttgcaaggcagactatcaaccacg 6514620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 12042016 - 12041951
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||| | |||||||||||||| ||||||||||| |||| | ||||| ||| |||||||||||||    
T  12042016 aggtcgttctctttaagacgtttcgtggcactgcccaaaaatatgcaaggcaaactatcaaccacg 12041951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 15414961 - 15414900
Alignment:
Q  413 cgctttctttaagacgttttgtggcactgccaaaaattgtg-caagcagactatcaaccacg 473  Q
    |||| |||||||| ||||||||||||||||| |||||||||  | ||||| |||||||||||    
T  15414961 cgctctctttaagtcgttttgtggcactgcccaaaattgtgtgaggcagaatatcaaccacg 15414900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 41587244 - 41587179
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||| ||| |||||||||||||| ||| |||||   ||||||||||||| ||||||||||||||||    
T  41587244 aggttgctctctttaagacgtttcgtgacactgttcaaaattgtgcaagacagactatcaaccacg 41587179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 334 - 488
Target Start/End: Complemental strand, 16596094 - 16595938
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaa--aatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttt 431  Q
    |||||||||||||||||||||| |||||||  | |  |||||||||| ||||| |||| ||||||||||| |||||||||||||| ||||||||||||||    
T  16596094 tgttggaacaatagtcaaaattggttaaaaatatttttttttgtcactgaagagattattaggctgagtcgcggattaggtcgctctctttaagacgttt 16595995  T
Q  432 tgtggcactgccaaaaattgtgcaagcagactatcaaccacgacatctccagaataa 488  Q
    |||||||||| | ||||||||||||||||||| ||||||||||| || |||| ||||    
T  16595994 tgtggcactgtccaaaattgtgcaagcagactgtcaaccacgacgtccccaggataa 16595938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 334 - 488
Target Start/End: Complemental strand, 33723077 - 33722924
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    ||||||||||||||||||||||||||||||| |  ||| |||||||||||| |||||||||||||||| |||| |||||| || |||||||||||||| |    
T  33723077 tgttggaacaatagtcaaaattagttaaaaa-tattttctgtcaccgaagagattactaggctgagtcgcggactaggtcactctctttaagacgtttcg 33722979  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaaccacgacatctccagaataa 488  Q
    || ||||| | |||||||||||||||||| ||| |||||||| || |||| ||||    
T  33722978 tgacactgtccaaaattgtgcaagcagaccatcgaccacgacgtccccaggataa 33722924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 334 - 475
Target Start/End: Complemental strand, 15020625 - 15020483
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttt-tgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    ||||||||||||||||||||||||||||||||  ||| | ||||||||||||   ||||||||||| || | || ||||| ||| ||||||| ||||||     
T  15020625 tgttggaacaatagtcaaaattagttaaaaaaatattgtatgtcaccgaagagtctactaggctgaatcgcagactaggttgctctctttaaaacgtttc 15020526  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    ||| |||| || |||||||||||| ||||||||||||||||||    
T  15020525 gtgacacttcccaaaattgtgcaaacagactatcaaccacgac 15020483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 346 - 475
Target Start/End: Original strand, 20513055 - 20513184
Alignment:
Q  346 agtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaa 445  Q
    ||||| |||||||||||||    ||| |||||  ||||| ||||||||||||||||  ||| ||||||||| ||||||||| |||| ||||||||||  |    
T  20513055 agtcagaattagttaaaaatatttttctgtcattgaagagattactaggctgagtcgtggactaggtcgctctctttaagatgtttcgtggcactgctca 20513154  T
Q  446 aaattgtgcaagcagactatcaaccacgac 475  Q
    ||||||||||||||||||||||||||||||    
T  20513155 aaattgtgcaagcagactatcaaccacgac 20513184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 330 - 475
Target Start/End: Complemental strand, 40684993 - 40684848
Alignment:
Q  330 ataatgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgt 429  Q
    |||||| |||||||||||| |||||||||||||||    ||| |||||  ||||| ||||||||| |||||  ||||||||| |||| | ||||||||||    
T  40684993 ataatgatggaacaatagttaaaattagttaaaaatatttttctgtcatggaagaaattactaggttgagttgcggattaggccgctctttttaagacgt 40684894  T
Q  430 tttgtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    |||| || |||| | ||||| |||||||||||||||||| ||||||    
T  40684893 tttgcggtactgtctaaaatcgtgcaagcagactatcaatcacgac 40684848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 369 - 475
Target Start/End: Complemental strand, 2575379 - 2575273
Alignment:
Q  369 tttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaa 468  Q
    ||||||||| |||| | ||||||||| ||||| ||| ||||||||| | ||||||| ||||||||| |||||||| |||||| |||||||||| ||||||    
T  2575379 tttttgtcatcgaaaaaattactaggttgagttacgaattaggtcgttctctttaatacgttttgtagcactgcctaaaattatgcaagcagaatatcaa 2575280  T
Q  469 ccacgac 475  Q
    |||||||    
T  2575279 ccacgac 2575273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 5271534 - 5271438
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  5271534 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 5271438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 13522107 - 13522011
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  13522107 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 13522011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 31269014 - 31269110
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  31269014 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcctaaaattgtgcaaggcagactatcaaccacg 31269110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 31273501 - 31273597
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  31273501 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 31273597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 488
Target Start/End: Complemental strand, 42758879 - 42758759
Alignment:
Q  368 atttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatc 466  Q
    |||||| ||| ||||| | |||||||| ||||||||| |  |||||||| ||||||||| |||| ||||||||||| ||||||||||||| |||||||||    
T  42758879 atttttttcatcgaagttgttactaggttgagtcacg-accaggtcgctctctttaagatgtttcgtggcactgcccaaaattgtgcaagacagactatc 42758781  T
Q  467 aaccacgacatctccagaataa 488  Q
    ||||||| |  |||||||||||    
T  42758780 aaccacgtcgcctccagaataa 42758759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 37259992 - 37259896
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  ||||||||||||||||||||||| |||||||| |  |||||||||||| |||||||||||||||||    
T  37259992 accgaagttgttactaggttgagtcacg-accaggtcgctttctttaagacgtttcgtggcactactcaaaattgtgcaaggcagactatcaaccacg 37259896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 471
Target Start/End: Complemental strand, 55081854 - 55081724
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaa-atcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    ||||||||||||||||||||||||||||||| ||  ||  ||||| |||||| ||||  |||||||||| ||||||||||||||         |||||||    
T  55081854 tgttggaacaatagtcaaaattagttaaaaatatttttcctgtcatcgaagagattatcaggctgagtcgcggattaggtcgct--------cacgtttt 55081763  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaacca 471  Q
    || |||||||  |||||||| ||||||||||||||||||    
T  55081762 gtagcactgctcaaaattgtacaagcagactatcaacca 55081724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 482
Target Start/End: Complemental strand, 33469078 - 33468983
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacgacatctcca 482  Q
    |||||||| ||||||||| | ||||||| | |||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| || |||||    
T  33469078 ttactaggttgagtcacg-actaggtcgttctctttaagacgttttgtggcactgcccaaagttgtgcaaggcagactgtcaaccacgccacctcca 33468983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 37264669 - 37264583
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||    
T  37264669 ttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattatgcaaggcagactatcaaccacg 37264583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 469
Target Start/End: Complemental strand, 8030560 - 8030499
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaac 469  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  8030560 aggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaagatagactatcaac 8030499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 16421009 - 16421105
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| || ||||||| ||| ||||||||||| |||||||||||| |||||||||||||||||    
T  16421009 accgaagttgttactaggttgagtcacg-accaggtcgctctcattaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 16421105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 31765897 - 31765962
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||| || |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  31765897 aggtcactctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 31765962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 472
Target Start/End: Original strand, 13059390 - 13059485
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccac 472  Q
    ||||||| |||||||||| ||||||| | |  || ||||| |||||||||||||| ||||||||||  ||||||||||||| |||||||||||||||    
T  13059390 accgaagttattactaggttgagtcatg-accagatcgctctctttaagacgtttcgtggcactgcataaaattgtgcaagacagactatcaaccac 13059485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 488
Target Start/End: Original strand, 12878229 - 12878330
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacgacatctccagaa 485  Q
    |||||||| ||||||||| || |||||||| |||||||||||||| ||| ||||    |||||||||||| |||||||||||| |||| || ||||||||    
T  12878229 ttactaggttgagtcacg-atcaggtcgctctctttaagacgtttcgtgacacttttcaaaattgtgcaaagcagactatcaatcacgccacctccagaa 12878327  T
Q  486 taa 488  Q
    |||    
T  12878328 taa 12878330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 488
Target Start/End: Original strand, 55251710 - 55251810
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacgacatctccagaa 485  Q
    |||||||| ||||||||| |  |||||||| | |||||||||||| ||||||||| | ||||||||||||| |||||||||||||||| || |||||| |    
T  55251710 ttactaggttgagtcacg-accaggtcgctct-tttaagacgtttcgtggcactgtccaaaattgtgcaagacagactatcaaccacgccacctccagga 55251807  T
Q  486 taa 488  Q
    |||    
T  55251808 taa 55251810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 12823979 - 12823914
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| |||||||||| ||| ||||||||||| ||||||||||||| || |||||||||||||    
T  12823979 aggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaagacaaactatcaaccacg 12823914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 488
Target Start/End: Original strand, 19106633 - 19106710
Alignment:
Q  412 tcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacgacatctccagaataa 488  Q
    ||||||||||||||||||||  | |||||||| |||||||||||| || |||||||||||||| |  |||||||||||    
T  19106633 tcgctttctttaagacgtttcatagcactgcccaaaattgtgcaaggctgactatcaaccacgtcgcctccagaataa 19106710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 475
Target Start/End: Complemental strand, 39992027 - 39991894
Alignment:
Q  343 aatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgc 442  Q
    |||||| |||||||||| ||||||  |||| |||||| |||| ||||||||| |||||| |  |||| || | | |||||||||  |||||| ||||| |    
T  39992027 aatagttaaaattagttcaaaaatatttttggtcaccaaagagattactaggttgagtcgcatattaagttgttctctttaagatattttgtagcactac 39991928  T
Q  443 c-aaaaattgtgcaagcagactatcaaccacgac 475  Q
    | ||||||||||||| |||||||| ||| |||||    
T  39991927 ccaaaaattgtgcaatcagactataaactacgac 39991894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 472
Target Start/End: Complemental strand, 5928303 - 5928239
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccac 472  Q
    |||||||| ||||||||| |||| ||||||||||  |||||||||||| ||||||||||||||||    
T  5928303 aggtcgctctctttaagatgtttagtggcactgctcaaaattgtgcaaggcagactatcaaccac 5928239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 8693701 - 8693787
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||| ||||| || || ||||||||||||| || |||||||||||||    
T  8693701 ttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcgctacccaaaattgtgcaagacatactatcaaccacg 8693787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 13065883 - 13065787
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| | || |||||| ||||||||||||||  |||||||||| ||| ||||| || | |||||||||||||||    
T  13065883 accgaagttgttactaggttgagtcacg-actatgtcgctctctttaagacgtttcatggcactgcccaaagttgtgaaagggagactatcaaccacg 13065787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 469
Target Start/End: Original strand, 19906231 - 19906323
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaac 469  Q
    ||||||| ||||| |||| ||||||||| || |||||||| | |||||||||||  ||| ||||| | ||||||||||||| ||||||||||||    
T  19906231 accgaagttattattaggttgagtcacg-atcaggtcgctctttttaagacgttcagtgacactgtctaaaattgtgcaagacagactatcaac 19906323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 31729471 - 31729406
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| |||||||||||||| |||||||| || |||||||||||| |||||| ||||| ||||    
T  31729471 aggtcgctctctttaagacgtttcgtggcactacccaaaattgtgcaaggcagacaatcaatcacg 31729406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 51696992 - 51697072
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatca 467  Q
    |||||||| ||||||||| |  |||||||| || |||||||||||  |||||||||| |||||||||||| |||||||||||    
T  51696992 ttactaggttgagtcacg-accaggtcgctctccttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatca 51697072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 33463461 - 33463392
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag 457  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||| | ||| |||||||||    
T  33463461 ttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgtccaaagttgtgcaag 33463392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 16953107 - 16953160
Alignment:
Q  420 tttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccac 472  Q
    |||||||||||| |||| ||| || |||||||||||| ||||||||||||||||    
T  16953107 tttaagacgtttcgtggtactacccaaaattgtgcaaggcagactatcaaccac 16953160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 456
Target Start/End: Complemental strand, 48276749 - 48276681
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa 456  Q
    |||||||| ||| ||||| || |||||||| ||||||||||||||||| ||||||   ||||||||||||    
T  48276749 ttactaggttgaatcacg-atcaggtcgctctctttaagacgttttgttgcactgttcaaaattgtgcaa 48276681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 51697897 - 51697993
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  || ||||| | ||||||||||||  || ||||||  |||||||||||| |||||||||||||||||    
T  51697897 accgaagttgttactaggttgagtcacg-accagatcgctctttttaagacgtttcatgacactgctcaaaattgtgcaaggcagactatcaaccacg 51697993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 52691136 - 52691091
Alignment:
Q  412 tcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag 457  Q
    ||||| |||||||||||||||||| | ||||| |||||||||||||    
T  52691136 tcgctctctttaagacgttttgtgactctgcccaaaattgtgcaag 52691091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 337 - 475
Target Start/End: Original strand, 19954211 - 19954350
Alignment:
Q  337 tggaacaatagtcaaaattagttaaaaaatcatttt-tgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtg 435  Q
    ||||||||||||||||||||||||||||   ||||| |||||||||||| ||||||||| |||||| | || ||| ||||| ||||||||||||||||||    
T  19954211 tggaacaatagtcaaaattagttaaaaatatattttctgtcaccgaagagattactaggttgagtcgcagactagatcgctctctttaagacgttttgtg 19954310  T
Q  436 gcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  19954311 gcactgcccaaaattgtacaagcagactatcaaccacgac 19954350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 334 - 472
Target Start/End: Complemental strand, 4544410 - 4544271
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaa-atcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    |||| |||||||||||||||||||||||||| ||  |||  ||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||     
T  4544410 tgttagaacaatagtcaaaattagttaaaaatattttttcagtcaccgaagagattactaggctgagtcacggactaggtcgctctctttaagacgtttc 4544311  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccac 472  Q
     |||||||||  ||||||||||||| ||||||||||||||    
T  4544310 atggcactgctcaaaattgtgcaagtagactatcaaccac 4544271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 340 - 471
Target Start/End: Original strand, 19949760 - 19949892
Alignment:
Q  340 aacaatagtcaaaattagttaaaaa-atcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggca 438  Q
    |||| |||||||||||||||||||| ||  ||| |||||||||||| ||||||||||||||||||||| || |||||| ||||||||| |||| ||||||    
T  19949760 aacagtagtcaaaattagttaaaaatattttttctgtcaccgaagagattactaggctgagtcacggactacgtcgctctctttaagaagtttcgtggca 19949859  T
Q  439 ctgccaaaaattgtgcaagcagactatcaacca 471  Q
    ||||| ||||||| |||||||||||||||||||    
T  19949860 ctgcccaaaattgagcaagcagactatcaacca 19949892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 334 - 475
Target Start/End: Original strand, 34517179 - 34517318
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    |||||||||||||||||||||||||| ||||||  ||| |||||| ||||| |||| |||| |||||||| || ||| ||| || ||||||||||||| |    
T  34517179 tgttggaacaatagtcaaaattagtt-aaaaatattttatgtcactgaagagattattaggttgagtcacagagtagatcgtttcctttaagacgtttcg 34517277  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    |||||||| | ||||||||||||| |||||||||||||||||    
T  34517278 tggcactgtc-aaaattgtgcaaggagactatcaaccacgac 34517318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 334 - 488
Target Start/End: Original strand, 2469910 - 2470065
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattact-aggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    ||||| |||||||||||||||| ||||||||    ||| |||||||||||| |||  | |||| ||||  || | ||||||||| |||||||||||||||    
T  2469910 tgttgaaacaatagtcaaaattggttaaaaatatttttctgtcaccgaagagatttatcaggcagagttgcgaactaggtcgctctctttaagacgtttt 2470009  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacgacatctccagaataa 488  Q
    ||||||||||  ||||||||||||||||||||||||| ||||| || |||| ||||    
T  2470010 gtggcactgctcaaaattgtgcaagcagactatcaactacgacgtccccaggataa 2470065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 475
Target Start/End: Complemental strand, 27236497 - 27236356
Alignment:
Q  335 gttggaacaatagtcaaaattagttaaaaaatcatttt--tgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    |||| |||||||| |||||||||||||||||| |||||  | ||||  |||| |||| |||||||| || |||| || |||||||||||| ||| |||||    
T  27236497 gttgtaacaatagccaaaattagttaaaaaat-attttactatcacaaaagagattattaggctgattcgcggactatgtcgctttctttgagatgtttt 27236399  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    ||||||||||  ||| |||||||| || |||||||||||||||    
T  27236398 gtggcactgctcaaagttgtgcaaacaaactatcaaccacgac 27236356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 1807452 - 1807548
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| | ||||||||| |||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||    
T  1807452 accgaagttgttactaggttgagtcacg-actaggtcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacg 1807548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 31449971 - 31449885
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  31449971 ttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 31449885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 33416527 - 33416623
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||| | |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  33416527 accgaagttgttactaggttgagtcacg-accaggtcggtctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 33416623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 44926038 - 44925942
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||| |||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  44926038 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaaaacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 44925942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 40125999 - 40125904
Alignment:
Q  378 ccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||| | |||||||| ||||||||| |  || ||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  40125999 ccgaagttgttactaggttgagtcacg-accagatcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 40125904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 411 - 473
Target Start/End: Complemental strand, 17953955 - 17953892
Alignment:
Q  411 gtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||||||    
T  17953955 gtcgctttctttaagacgtttcgtggcactgcccaaaattgtgcaagacagaatatcaaccacg 17953892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 34118456 - 34118542
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| ||||||||||||||  |||||||||| |||||||||||| |||||||||||||||||    
T  34118456 ttactaggttgagtcacg-accaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacg 34118542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 36683569 - 36683655
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||| | | ||||||||| |||||||||||||| ||||||||||| ||||||||| || |||||||||||||||||    
T  36683569 ttactaggttgagtcatg-actaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaaggcagactatcaaccacg 36683655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 473
Target Start/End: Original strand, 19166597 - 19166710
Alignment:
Q  361 aaaaatcatttttgtc-accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgca-agc 458  Q
    |||||| |||||| || ||||||| | |||||||| ||||||||| |  | |||||| |||||||||||||| ||||||||||| |||||||||||  ||    
T  19166597 aaaaataatttttatctaccgaagttgttactaggttgagtcacg-accatgtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcacggc 19166695  T
Q  459 agactatcaaccacg 473  Q
    |||||||||||||||    
T  19166696 agactatcaaccacg 19166710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 15875752 - 15875687
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| |||||| ||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  15875752 aggtcgctctctttaggacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 15875687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 17025915 - 17026011
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| || |||||||||| ||||||||||| ||||    
T  17025915 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaacattgtgcaagacagactatcaatcacg 17026011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 17556407 - 17556503
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| || |||||||||| ||||||||||| ||||    
T  17556407 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaacattgtgcaagacagactatcaatcacg 17556503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 18876481 - 18876386
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| | |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  18876481 accgaagttgttactaggttgagtcacg-accaggtcgctct-tttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 18876386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 30777026 - 30777122
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttt 431  Q
    |||||||| |||||||||||| ||||||||| |  ||||||||| |||||| |||| |||| |||||||| || |||||| || ||||||||||||||    
T  30777026 tgttggaataatagtcaaaataagttaaaaa-tattttttgtcatcgaagaaattattaggttgagtcacagactaggtcactctctttaagacgttt 30777122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 40130801 - 40130722
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag 457  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||||    
T  40130801 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaag 40130722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 484
Target Start/End: Original strand, 20072105 - 20072184
Alignment:
Q  405 gattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaaccacgacatctccaga 484  Q
    |||||||||||| |||||||||| ||| ||| || | || ||||||||||||| ||| ||||||||||||| ||||||||    
T  20072105 gattaggtcgctctctttaagacatttcgtgacatttcctaaaattgtgcaagtagattatcaaccacgacgtctccaga 20072184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 470
Target Start/End: Complemental strand, 4238430 - 4238337
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaacc 470  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||| ||||||  |||||||||| |||||||||||| ||||||||||||||    
T  4238430 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaacacgtttcatggcactgcccaaaattgtgcaaggcagactatcaacc 4238337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 24090607 - 24090703
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||| |||||||| ||||| |||||| ||||    
T  24090607 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaagttgtgcaaggcagaatatcaatcacg 24090703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 472
Target Start/End: Original strand, 2965641 - 2965705
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccac 472  Q
    |||||||| ||||||| |||||| ||||||||||| ||||||||||||| || ||||||||||||    
T  2965641 aggtcgctctctttaaaacgtttcgtggcactgcctaaaattgtgcaagacacactatcaaccac 2965705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 470
Target Start/End: Complemental strand, 4243159 - 4243076
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaacc 470  Q
    |||||||| ||||||||| |  |||||||| ||||||| ||||||  |||||||||| |||||||||||| ||||||||||||||    
T  4243159 ttactaggttgagtcacg-accaggtcgctctctttaacacgtttcatggcactgcccaaaattgtgcaaggcagactatcaacc 4243076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 1911053 - 1910988
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgc-aagcagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||    |||||||||| |||||||||||||||||||    
T  1911053 aggtcgctctctttaagacgtttcgtggcactagtcaaaattgtgcaaagcagactatcaaccacg 1910988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 28559769 - 28559673
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  | |||||| ||| |||||||||| ||||||||| | |||||||||||| ||| |||||||||||||    
T  28559769 accgaagttgttactaggttgagtcacg-acaatgtcgctctctataagacgtttcgtggcactgtccaaaattgtgcaaggcaaactatcaaccacg 28559673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 43302794 - 43302737
Alignment:
Q  418 tctttaagacgttttgtggcactg-ccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||||||||| ||||||||| ||||||||||||||| | |||||||||||||||    
T  43302794 tctttaagacgtttcgtggcactgtccaaaaattgtgcaaggtagactatcaaccacg 43302737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 476
Target Start/End: Original strand, 7145824 - 7145894
Alignment:
Q  406 attaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaaccacgaca 476  Q
    |||| |||||| || |||| || ||||||| |||||   ||||||||||||||||||||||||| ||||||    
T  7145824 attaagtcgctctcgttaacacattttgtgacactgtttaaaattgtgcaagcagactatcaactacgaca 7145894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 23548747 - 23548651
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| |||||||||   | ||||||| ||| |||||||||| |||||||||   |||||||||||| || ||||||||||||||    
T  23548747 accgaagttgttactaggttgagtcacgacct-ggtcgctctctataagacgtttcgtggcactgtgtaaaattgtgcaaggcggactatcaaccacg 23548651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 473
Target Start/End: Original strand, 29220284 - 29220340
Alignment:
Q  418 tctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||||||||||||| |||||   |||||||||||| | |||||||||||||||    
T  29220284 tctttaagacgttttgtgtcactgatcaaaattgtgcaaggtagactatcaaccacg 29220340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 339 - 475
Target Start/End: Complemental strand, 171869 - 171732
Alignment:
Q  339 gaacaatagtcaaaattagttaaaaa-atcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggc 437  Q
    |||||||||||||||||||||||||| ||  ||| | ||| |||||| |||||||||||||||| | || ||||||||| |||||||||||||| |||||    
T  171869 gaacaatagtcaaaattagttaaaaatattttttctctcatcgaagagattactaggctgagtcgcagactaggtcgctctctttaagacgtttcgtggc 171770  T
Q  438 actgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    |||||| |||||||||||||||||||||||||||||||    
T  171769 actgcctaaaattgtgcaagcagactatcaaccacgac 171732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 334 - 472
Target Start/End: Complemental strand, 6898514 - 6898376
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    |||| |||||| |||||||||||||||||||    ||| |||||||||||| |||||||||||||||| |||| ||| ||||| ||||||||| ||||||    
T  6898514 tgttagaacaagagtcaaaattagttaaaaatatttttctgtcaccgaagagattactaggctgagtcgcggactagatcgctctctttaagatgttttg 6898415  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaaccac 472  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  6898414 tggcactgtccaaaattgtgcaagcagactatcaaccac 6898376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 471
Target Start/End: Complemental strand, 29478314 - 29478176
Alignment:
Q  334 tgttggaacaatagtcaaaa-ttagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    ||||||||||||||| |||| ||||||| |||    ||| ||||| |||||| | ||||||||||||||  ||| || |||||| |||| |||||||||     
T  29478314 tgttggaacaatagtaaaaaattagttataaagatttttctgtcatcgaagagactactaggctgagtcgtggactaagtcgctctcttcaagacgtttc 29478215  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaacca 471  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  29478214 gtggcactgcccaaaattgtgcaaacagactatcaacca 29478176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 374 - 472
Target Start/End: Complemental strand, 1289451 - 1289353
Alignment:
Q  374 gtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaaccac 472  Q
    ||||||||||| ||||||||| ||| || | || ||||||||| |||||||||||||||||| |||| |  |||||| |||||||||||||||||||||    
T  1289451 gtcaccgaagagattactaggttgaatcgcagaataggtcgctctctttaagacgttttgtgacactactcaaaattatgcaagcagactatcaaccac 1289353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 9651082 - 9650986
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  9651082 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 9650986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 4579498 - 4579584
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  4579498 ttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 4579584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 409 - 482
Target Start/End: Original strand, 8268304 - 8268378
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacgacatctcca 482  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||| |||||||||||||||| || |||||    
T  8268304 aggtcgctctctttaagacgttttgtggcactgtccaaaattgtgcaagacagactatcaaccacgccacctcca 8268378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 8076061 - 8076126
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  8076061 aggtcgctctctttaagacgtttcgtggcactgcctaaaattgtgcaagacagactatcaaccacg 8076126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 23866079 - 23866144
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  23866079 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 23866144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 26341179 - 26341275
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||| ||| ||||||||||| |||||||||||| |||||||||||||||||    
T  26341179 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 26341275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 4930213 - 4930309
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| ||||||||| ||| || |||||||||||||    
T  4930213 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaagtcatactatcaaccacg 4930309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 23247017 - 23246952
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||    
T  23247017 aggtcgctctctttaagatgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 23246952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 44510792 - 44510696
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  || | ||| |||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||    
T  44510792 accgaagttgttactaggttgagtcacg-accagattgctctctttaagacgttttgtggcactgtccaaaattgtgcaagacagactatcaaccacg 44510696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 475
Target Start/End: Complemental strand, 23616544 - 23616399
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    ||||||||||||| |||||||||| ||||||||  |||  |||||||||||||||| ||||| |||||  ||| ||  ||||| | |||||||  ||||     
T  23616544 tgttggaacaataatcaaaattaggtaaaaaatattttcagtcaccgaagatattattaggcggagtcgtggactaaatcgctctttttaagatcttttt 23616445  T
Q  434 tggcac----tgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    ||| ||    || | ||||||||||||||| |||||||||||||||    
T  23616444 tggtactgattgtccaaaattgtgcaagcatactatcaaccacgac 23616399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 27238232 - 27238318
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||||||||||||||  ||||||||| || |||||||||||| ||||    
T  27238232 ttactaggttgagtcacg-accaggtcgctctctttaagacgttttgtggcactgctcaaaattgtgtaaggcagactatcaatcacg 27238318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 12254090 - 12254155
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| |||||||||||||||| ||| |||||||| |||||||||||| ||||    
T  12254090 aggtcgctctctttaagatgttttgtggcactgcctaaagttgtgcaaggcagactatcaatcacg 12254155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 42627281 - 42627216
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgc-aagcagactatcaaccacg 473  Q
    |||||||| |||||||||||||| |||||||  || |||||||||| |||||||||||||||||||    
T  42627281 aggtcgctctctttaagacgtttcgtggcacaacccaaaattgtgcaaagcagactatcaaccacg 42627216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 473
Target Start/End: Complemental strand, 6591054 - 6591002
Alignment:
Q  422 taagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  6591054 taagacgttttgtggcactgtctaaaattgtgcaaggcagactatcaaccacg 6591002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 469
Target Start/End: Complemental strand, 44423242 - 44423160
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaac 469  Q
    |||||||| ||||||||| || || ||||| |||||||||||||| ||||||||| | |||||||| ||| |||||||||||||    
T  44423242 ttactaggttgagtcacg-atcagatcgctctctttaagacgtttcgtggcactgaccaaaattgttcaaggcagactatcaac 44423160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 482
Target Start/End: Complemental strand, 3357747 - 3357642
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacgac 475  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| | || || ||| ||| |||||||| ||||||||||||||||| |    
T  3357747 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgcggtacagcccaaagttgtgcaaggcagactatcaaccacgcc 3357649  T
Q  476 atctcca 482  Q
     ||||||    
T  3357648 gtctcca 3357642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 475
Target Start/End: Complemental strand, 25832708 - 25832652
Alignment:
Q  420 tttaagacgttttgtggcactg-ccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    |||||||||||| ||||||||| ||||||||| |||||||| |||||||| ||||||    
T  25832708 tttaagacgtttcgtggcactgcccaaaaattatgcaagcaaactatcaatcacgac 25832652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 13314341 - 13314255
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| |  || ||||| |||||||||||||| |||| |||||| |||||||||||| | ||||||||| |||||    
T  13314341 ttactaggttgagtcacg-accagatcgctctctttaagacgtttcgtggtactgcccaaaattgtgcaaggtagactatcagccacg 13314255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 10388480 - 10388415
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgcc 443  Q
    ||||||| | |||||||| ||||||||| |  |||||||| ||||||||||||||||||||| ||||    
T  10388480 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgttttgtggcattgcc 10388415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 25543467 - 25543398
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag 457  Q
    |||||||| ||||||||  || |||||||  |||||||||||||| |||| |||||| |||||||||||||    
T  25543467 ttactaggttgagtcaca-atcaggtcgcactctttaagacgtttcgtggtactgcctaaaattgtgcaag 25543398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 29150914 - 29151010
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  || ||||| | |||||||||||| ||| ||||||  |||||||||||| ||| |||||||||||||    
T  29150914 accgaagttgttactaggttgagtcacg-accagatcgctctttttaagacgtttcgtgacactgctcaaaattgtgcaaggcaaactatcaaccacg 29151010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 334 - 478
Target Start/End: Original strand, 35129566 - 35129709
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttg 433  Q
    ||||||||||||||||||||||||||||||| |  |||  |||| |||| | |||||||  ||||||| | || ||||||||| ||||||||||||||      
T  35129566 tgttggaacaatagtcaaaattagttaaaaa-tattttccgtcatcgaaaagattactatactgagtcgcagactaggtcgctctctttaagacgtttca 35129664  T
Q  434 tggcactgccaaaaattgtgcaagcagactatcaaccacgacatc 478  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  35129665 tggcactgcccaaaattgtgcaagcagactatcaaccacgacatc 35129709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 334 - 475
Target Start/End: Original strand, 14041627 - 14041768
Alignment:
Q  334 tgttggaacaatagtcaaaattagtt-aaaaaatcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgtttt 432  Q
    |||||||||||||||||||||||||| ||||||  | |||||||| |||||| |||||||| || |||| |||||||||||||| ||||||| ||||||     
T  14041627 tgttggaacaatagtcaaaattagtttaaaaaaataattttgtcatcgaagagattactagacttagtcgcggattaggtcgctctctttaaaacgtttc 14041726  T
Q  433 gtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    ||| ||||||| ||||||||||| |||  ||||||||||||||    
T  14041727 gtgacactgcctaaaattgtgcatgca-tctatcaaccacgac 14041768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 476
Target Start/End: Complemental strand, 32815220 - 32815079
Alignment:
Q  336 ttggaacaatagtcaaaattagttaaaaa-atcatttttgtcaccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgt 434  Q
    ||||||||||||||||||||| ||||||| ||  ||||||||| | || | ||||||||||| | || |||| |||||||   |||||||||||||| |     
T  32815220 ttggaacaatagtcaaaattaattaaaaatattttttttgtcatcaaaaagattactaggcttattcgcggactaggtcgtcctctttaagacgtttcgc 32815121  T
Q  435 ggcactgccaaaaattgtgcaagcagactatcaaccacgaca 476  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  32815120 ggcactgcccaaaattgtgcaagcagactatcaaccacgaca 32815079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 6407975 - 6407879
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgc-aagcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| || |||||||| |||| ||||||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  6407975 accgaagttgttactaggttgagtcacg-atcaggtcgctctcttgaagacgtttcgtggcactgcccaaaattgtacaaagcagactatcaaccacg 6407879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 472
Target Start/End: Complemental strand, 29892366 - 29892281
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccac 472  Q
    |||||||| |||||||||| | |||||||| ||||||||| |||| ||||||||||| ||||||||||||| || ||||||||||||    
T  29892366 ttactaggttgagtcacgg-tcaggtcgctctctttaagaagtttggtggcactgcccaaaattgtgcaagacaaactatcaaccac 29892281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 11570833 - 11570768
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||| ||||||||||    
T  11570833 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagacaatcaaccacg 11570768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 12688950 - 12689062
Alignment:
Q  376 caccgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacga 474  Q
    |||||||| | |||||||| ||||||| | |  ||||| || ||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||     
T  12688950 caccgaagttgttactaggttgagtcatg-accaggtcactctctttaagacgttttgtgatactgcccaaaattgtgcaaggcagactatcaaccacgc 12689048  T
Q  475 catctccagaataa 488  Q
    | ||||||| ||||    
T  12689049 cgtctccaggataa 12689062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 488
Target Start/End: Complemental strand, 33687687 - 33687607
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacgacatctccagaataa 488  Q
    |||||||| |||||||||||||| ||||||||| | ||||||||||||| |||||||||||||| | | ||||||| ||||    
T  33687687 aggtcgctctctttaagacgtttcgtggcactggccaaaattgtgcaagacagactatcaaccatgccgtctccaggataa 33687607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 412 - 473
Target Start/End: Original strand, 21309045 - 21309107
Alignment:
Q  412 tcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||| ||||||||||||||  |||||||||| |||||||||||| |||||||||||||||||    
T  21309045 tcgctctctttaagacgtttcatggcactgcccaaaattgtgcaatgcagactatcaaccacg 21309107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 2700221 - 2700125
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  || ||||| |||||||||||||| |||||||||   ||||||||||||| ||||||||||||||||    
T  2700221 accgaagttgttactaggttgagtcacg-accagatcgctctctttaagacgtttcgtggcactgttcaaaattgtgcaagacagactatcaaccacg 2700125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 469
Target Start/End: Original strand, 19674293 - 19674385
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaac 469  Q
    ||||||| | |||||||| ||||||||| |  ||||| || ||||||||||||||  |||||||||| ||||||||||||| ||||||||||||    
T  19674293 accgaagttgttactaggttgagtcacg-accaggtcactctctttaagacgtttcatggcactgcccaaaattgtgcaagacagactatcaac 19674385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 16836231 - 16836175
Alignment:
Q  418 tctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||    
T  16836231 tctttaagacgtttcgtggcactgcccaaaattgtacaaggcagactatcaaccacg 16836175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 7499291 - 7499228
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaaaatcatttttgtcaccgaagatattactaggctg 397  Q
    ||||||||||||| | |||||||||||||||||  ||| ||||| |||||| ||||||||||||    
T  7499291 tgttggaacaataatgaaaattagttaaaaaatattttctgtcatcgaagagattactaggctg 7499228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 11614197 - 11614111
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||||||| ||||||||| || |||| | | ||||||| ||||||| |||||||||  |||||||||||| |||||||||||||||||    
T  11614197 ttactaggttgagtcacg-atgaggttgttctctttaaaacgttttatggcactgctcaaaattgtgcaaggcagactatcaaccacg 11614111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 25316639 - 25316585
Alignment:
Q  420 tttaagacgttttgtggcactgccaaaaattgtgc-aagcagactatcaaccacg 473  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||    
T  25316639 tttaagacgttttgtggcactgcccaaaattgtgcaaagcaaactatgaaccacg 25316585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 26204133 - 26204079
Alignment:
Q  420 tttaagacgttttgtggcactgccaaaaattgtgc-aagcagactatcaaccacg 473  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||    
T  26204133 tttaagacgttttgtggcactgcccaaaattgtgcaaagcaaactatgaaccacg 26204079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 473
Target Start/End: Complemental strand, 17964635 - 17964578
Alignment:
Q  417 ttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||||||||||| ||||||||  | |||||||||||| |||||||||||||||||    
T  17964635 ttctttaagacgtttcgtggcactatccaaaattgtgcaaggcagactatcaaccacg 17964578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 469
Target Start/End: Original strand, 8747772 - 8747854
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaac 469  Q
    |||||||| ||||||||| |  |||||||| |||||||||||||  ||| ||||||| ||||||||||||| ||| ||||||||    
T  8747772 ttactaggttgagtcacg-accaggtcgctctctttaagacgttccgtgacactgcccaaaattgtgcaagacaggctatcaac 8747854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 475
Target Start/End: Complemental strand, 12714298 - 12714243
Alignment:
Q  420 tttaagacgttttgtggcactgccaaaaattgtgcaagcagactatcaaccacgac 475  Q
    |||||||||||||||||| |||| |||||||||  ||||| ||||||||| |||||    
T  12714298 tttaagacgttttgtggcgctgcaaaaaattgtataagcatactatcaactacgac 12714243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 21795762 - 21795720
Alignment:
Q  386 attactaggctgagtcacggattaggtcgctttctttaagacg 428  Q
    |||| ||||||||||| |||| |||||||||||||||||||||    
T  21795762 attattaggctgagtcgcggactaggtcgctttctttaagacg 21795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 11428054 - 11428103
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactg-ccaaaaattgtgcaag 457  Q
    |||||||| |||||||||||||| ||||||||| |||||| |||||||||    
T  11428054 aggtcgctctctttaagacgtttcgtggcactgcccaaaagttgtgcaag 11428103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 474
Target Start/End: Original strand, 14775632 - 14775661
Alignment:
Q  445 aaaattgtgcaagcagactatcaaccacga 474  Q
    ||||||||||||||||||||||||||||||    
T  14775632 aaaattgtgcaagcagactatcaaccacga 14775661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 474
Target Start/End: Complemental strand, 29610963 - 29610934
Alignment:
Q  445 aaaattgtgcaagcagactatcaaccacga 474  Q
    ||||||||||||||||||||||||||||||    
T  29610963 aaaattgtgcaagcagactatcaaccacga 29610934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 363
Target Start/End: Complemental strand, 29611015 - 29610986
Alignment:
Q  334 tgttggaacaatagtcaaaattagttaaaa 363  Q
    ||||||||||||||||||||||||||||||    
T  29611015 tgttggaacaatagtcaaaattagttaaaa 29610986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 13736762 - 13736714
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag 457  Q
    ||||| || |||||| ||||||| ||||||||||| |||||||||||||    
T  13736762 aggtccctctctttacgacgtttcgtggcactgcctaaaattgtgcaag 13736714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 7084 - 7180
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  7084 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 7180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 10002 - 9906
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  10002 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 9906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 166170 - 166105
Alignment:
Q  409 aggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  166170 aggtcgctctctttaagacgtttcgtggcactgccaaaaattgtgcaagacatactatcaaccacg 166105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 4054 - 4150
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||| ||| ||||||||||| |||||||||||| |||||||||||||||||    
T  4054 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 4150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 473
Target Start/End: Complemental strand, 444011 - 443963
Alignment:
Q  425 gacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    ||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  444011 gacgtttcgtggcactgcc-aaaattgtgcaaggcagactatcaaccacg 443963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 25389 - 25475
Alignment:
Q  387 ttactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    |||||||| ||||||||  |||||||| || |||||||||||||  ||| ||||||  ||||||||||||| ||||||||||||||||    
T  25389 ttactaggttgagtcaca-attaggtcactctctttaagacgttacgtgacactgcgtaaaattgtgcaagacagactatcaaccacg 25475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 35649 - 35710
Alignment:
Q  413 cgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaaccacg 473  Q
    |||| |||||||||||||| ||| ||||| | |||||||||||| |||||||||||||||||    
T  35649 cgctctctttaagacgtttcgtgacactggccaaaattgtgcaaggcagactatcaaccacg 35710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 83046 - 83140
Alignment:
Q  377 accgaagatattactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaacca 471  Q
    ||||||| | |||||||| ||||||||| |  |||||||| |||||||||||||| ||| |||  || |||||| ||||| |||||||||||||||    
T  83046 accgaagttgttactaggttgagtcacg-accaggtcgctctctttaagacgtttcgtgacaccacccaaaattatgcaaggcagactatcaacca 83140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 13289 - 13346
Alignment:
Q  415 ctttctttaagacgttttgtggcactgccaaaaattgtgcaa-gcagactatcaacca 471  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||| | |||||||||||||    
T  13289 ctttctttaagacgtttggtgacactgcccaaaattgttcaaggtagactatcaacca 13346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2020 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 360 - 447
Alignment:
Q  386 attactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||||| ||||||||| | || |||||||| ||||||||||||  ||||| || | ||| ||||||||| || |||||||||||||    
T  360 attactaggttgagtcacg-actatgtcgctttttttaagacgtttcatggcattgtccaaagttgtgcaagacacactatcaaccacg 447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 165135 - 165048
Alignment:
Q  386 attactaggctgagtcacggattaggtcgctttctttaagacgttttgtggcactgccaaaaattgtgcaag-cagactatcaaccacg 473  Q
    ||||||||| ||||||||| | || |||||||| ||||||||||||  ||||| || | ||| ||||||||| || |||||||||||||    
T  165135 attactaggttgagtcacg-actatgtcgctttttttaagacgtttcatggcattgtccaaagttgtgcaagacacactatcaaccacg 165048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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