View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8528_low_9 (Length: 459)

Name: NF8528_low_9
Description: NF8528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8528_low_9
NF8528_low_9
[»] chr1 (1 HSPs)
chr1 (1-443)||(28952958-28953396)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 28953396 - 28952958
Alignment:
Q  1 ctagttcaagcacaaaatcatcagtgacagagaatgaaaatgatcatgcagattcctttgataattctttggcattaattcccgtgactgtgaatgtgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  28953396 ctagttcaagcacaaaatcatcagtgacagagaatgaaaatgatcatgcagattcctttgataattctttggcattagttcctgtgactgtgaatgtgac 28953297  T
Q  101 agcaacatctcaagctaccacaactaatcacaaacaagtcaatgaaagtgtctttgaagctctagatgcattgaaggttgccaaggaaaagcttcaaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28953296 agcaacatctcaagctaccacaactaatcacaaacaagtcaatgaaagtgtctttgaagctctagatgcattgaaggttgccaaggaaaagcttcaaagt 28953197  T
Q  201 tccttaggaataaggcaaatgattcgcgtcggcctaatgtaacttctcactccgagatagtaatgattgcatatttggattgacagtgagtttgacaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  28953196 tccttaggaataaggcaaatgattcgcgtcggcctaatgtaacttctcactccgaaatagtaatgattgcatatttggattgacagtgagtttgataaaa 28953097  T
Q  301 ttacagtggcactacatgattttgctaaattcacggccggtccaaatatggactaaggctaaattatttgatatttctatgttaatgcattataggaaat 400  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28953096 ttacagtggcacaacatgattttgctaaattcacggccggtccaaatatggactaaggctaaattatttgatatttctatgttaatgcattataggaaat 28952997  T
Q  401 gagattattcagcatgtagatagagataggtgagaacaacaat 443  Q
    |||||||||||||||||||||    ||||||||||||||||||    
T  28952996 gagattattcagcatgtagat----ataggtgagaacaacaat 28952958  T

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